FC919312

Overview
NameFC919312
Unique NameFC919312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length304
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig504 contig Ccv1_Contig504:281..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A15_ARATH (1-aminocyclopropane-1-carboxylate synthase 5 OS=Arabidopsis thaliana GN=ACS5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.830e-23
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN----RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT L R  L  LV FI  KNIHL+ DEIY+ T+F   +F SV +V+++           +H++YSLSKD+GLPGFRVG +YS ++ +V+   KMSSFG V
Sbjct:  200 PSNPLGTALTRRELNLLVDFITSKNIHLISDEIYSGTMFGFEQFISVMDVLKDKKLEDTEVSKRVHVVYSLSKDLGLPGFRVGAIYSNDEMIVSAATKMSSFGLV 304          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSJ (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.901e-22
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK--FTSVAEVIQEMDCN----RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT   R  L+++V F+  K IHL+ DEIYA T F+ P   F S  EV+   D       D +H++YSLSKD+GLPGFRVG +YS N  VV+   KMSSFG V
Sbjct:  212 PSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAEPPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATKMSSFGLV 318          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSI (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.901e-22
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK--FTSVAEVIQEMDCN----RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT   R  L+++V F+  K IHL+ DEIYA T F+ P   F S  EV+   D       D +H++YSLSKD+GLPGFRVG +YS N  VV+   KMSSFG V
Sbjct:  212 PSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAEPPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDLGLPGFRVGAIYSANAAVVSAATKMSSFGLV 318          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A112_ARATH (Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.222e-22
Identity = 44/101 (43.56%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NP+G  L R+TL  ++ F  +KNIH++ DEI+A +V+   +F S+AE+    + ++  +HIIY LSKD+ +PGFR G++YSF++ VVN  +K+  F  V
Sbjct:  266 PSNPVGNILSRETLCDILRFAQEKNIHVISDEIFAGSVYGDKEFVSMAEIAGSGEFDKTRVHIIYGLSKDLSIPGFRAGVIYSFHEDVVNAAKKLMRFSSV 366          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A14_ARATH (1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.609e-21
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFIN-DKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC-NRDL---IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTT  +  L  L  FI  +KNIHLV DEIY+ TVF+S +F SV E+++     N D+   +HI+ SLSKD+GLPGFRVG +YS +  V++   KMSSFG V
Sbjct:  200 PSNPLGTTTTQTELNILFDFITKNKNIHLVSDEIYSGTVFNSSEFISVMEILKNNQLENTDVLNRVHIVCSLSKDLGLPGFRVGAIYSNDKDVISAATKMSSFGLV 305          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A110_ARATH (Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.035e-16
Identity = 38/99 (38.38%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP-KFTSVAEVIQ-EMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS 291
            P NP+G+ L R+ L +L+ F  ++NIH++ +EI+A +V     +F S+AE++  E + +R+ +HI+Y LSKD+   G R   +YSFN++V++  RK+++
Sbjct:  324 PSNPMGSLLSRENLYALLDFARERNIHIISNEIFAGSVHGEEGEFVSMAEIVDTEENIDRERVHIVYDLSKDLSFRGLRSAAIYSFNESVLSASRKLTT 422          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A1L2_HUMAN (1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Homo sapiens GN=ACCSL PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.491e-11
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF-SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLG     D+L   + F    N+H++ DEIY  +VF  S  F S+  +    D NR   H+I+  SKD G+ GFR G +Y+ N  V +    +S+FG++
Sbjct:  328 PQNPLGDIYSPDSLMKYLEFAKRYNLHVIIDEIYMLSVFDESITFHSILSMKSLPDSNR--THVIWGTSKDFGISGFRFGALYTHNKEVASA---VSAFGYL 424          
The following BLAST results are available for this feature:
BLAST of FC919312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
1A15_ARATH3.830e-2350.481-aminocyclopropane-1-carboxylate synthase 5 OS=Ar... [more]
1A11_ORYSJ1.901e-2251.401-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A11_ORYSI1.901e-2251.401-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A112_ARATH7.222e-2243.56Probable aminotransferase ACS12 OS=Arabidopsis tha... [more]
1A14_ARATH1.609e-2152.831-aminocyclopropane-1-carboxylate synthase 4 OS=Ar... [more]
1A110_ARATH2.035e-1638.38Probable aminotransferase ACS10 OS=Arabidopsis tha... [more]
1A1L2_HUMAN7.491e-1137.251-aminocyclopropane-1-carboxylate synthase-like pr... [more]

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Properties
Property NameValue
Genbank descriptionC06055B02T7 PCR Citrus clementina cDNA clone C06055B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919312 ID=FC919312; Name=FC919312; organism=Citrus clementina; type=EST; length=304bp
CCTTAGAATCCATTGGGCACAACTTTGGACAGAGACACACTTAAAAGCTT
AGTGAGCTTCATCAATGACAAGAACATTCACCTTGTATGCGACGAGATTT
ATGCGGCCACTGTCTTCAGCTCTCCTAAGTTCACGAGCGTTGCTGAAGTC
ATTCAAGAAATGGACTGCAATCGTGACCTCATTCATATCATTTACAGCTT
GTCTAAGGACATGGGGCTCCCTGGCTTTAGAGTTGGCATTGTGTACTCGT
TTAATGATACTGTTGTGAATTGCGGCCGCAAGATGTCAAGTTTCGGCTTC
GTGT
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