FC919323

Overview
NameFC919323
Unique NameFC919323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10534 contig Ccv1_Contig10534:325..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.123e-55
Identity = 99/121 (81.82%), Postives = 108/121 (89.26%), Query Frame = -3
Query:    6 VSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGIAR 368
            VS E+ HPLPKTADP+VQIAGNF+PV E+PV +NLP  GK+PD I+GVYVRNGANPLHEPV GHHFFDGDGMVHAVKF  GS SY+CRFT+TNRF QER LGRPVFPKAIGELHGHTGIAR
Sbjct:  105 VSHEKLHPLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIAR 225          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.123e-55
Identity = 102/143 (71.33%), Postives = 110/143 (76.92%), Query Frame = -3
Query:    6 PSKWNFXXXXXXXXXXXXXXXLVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGIAR 434
            P KWNF               LVS E +HPLPKTADP VQIAGNF+PVPE    Q LP  GK+P CI GVYVRNGANPL+EPVAGHHFFDGDGMVHAVKF  G+ SY+CRFTET R AQE+SLGRPVFPKAIGELHGH+GIAR
Sbjct:  102 PQKWNFLQKAAATGLDMVETALVSHESKHPLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIAR 244          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.611e-54
Identity = 95/119 (79.83%), Postives = 104/119 (87.39%), Query Frame = -3
Query:    6 QERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGIAR 362
            + R+HP PKTADP VQIAGNF PVPEKPV  NLP TG VP+CIQGVYVRNGANPLH+PV+GHH FDGDGMVHAV+F+ GSVSY+CRFTETNR  QER  GRPVFPKAIGELHGH GIA+
Sbjct:  167 ERRRHPHPKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAK 285          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.793e-49
Identity = 87/121 (71.90%), Postives = 98/121 (80.99%), Query Frame = -3
Query:    6 VSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGIAR 368
            +S E+  PLPKTADP VQIAGN+SPVPE  V +NL   G +PDCI GVY+RNGANP+ EP AGHH FDGDGMVHAVK   GS SY+CRFT+T R  QE+ LGRPVFPKAIGELHGH+GIAR
Sbjct:   88 ISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIAR 208          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.294e-47
Identity = 87/142 (61.27%), Postives = 101/142 (71.13%), Query Frame = -3
Query:    6 SKWNFXXXXXXXXXXXXXXXLVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGIAR 431
            S+WN                L+ +ER  PLPKT DP  QI+GN++PVPE+ V  +L   GK+PDCI GVY+RNGANPL EPV+GHH FDGDGMVHAVK   G  SYSCRFTET R  QE+ LG P+FPKAIGELHGH+GIAR
Sbjct:   74 SRWNPLQRAASAALDFAETALLRRERSKPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIAR 215          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.287e-43
Identity = 81/119 (68.07%), Postives = 94/119 (78.99%), Query Frame = -3
Query:    6 ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSV-SYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGIAR 359
            ER H LP TADP VQIAGNF+PV E+P    LP +G++P  I GVY RNGANP  +PVAGHH FDGDGMVHA++   G+  SY+CRFTET R  QER++GRPVFPKAIGELHGH+GIAR
Sbjct:  108 ERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIAR 226          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.273e-40
Identity = 73/122 (59.84%), Postives = 91/122 (74.59%), Query Frame = -3
Query:    6 VSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFN-KGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGIAR 368
            +  E+  PLPK  DP VQ++GNF+PV E PV   L   G++P C++GVY+RNGANP+  P+AGHH FDGDGM+HAV       VSYSCR+T+TNR  QE +LGR VFPK IGELHGH+G+AR
Sbjct:   83 IPMEQNRPLPKPTDPAVQLSGNFAPVNECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLAR 204          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.636e-22
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = -3
Query:   12 PTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGI 326
            P   + GNF PV E P  ++LP  G +PDC+ G +VR G NP   PVAG+H+FDGDGM+H ++   G  +Y  RF ET+R  QE   GR  F K IG+L G  G+
Sbjct:   47 PHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMK-IGDLKGLFGL 150          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.978e-21
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = -3
Query:   12 PTVQIAGNFSPV-PEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGI 326
            P   ++GNF+PV  E P C +LP  G +P+C+ G +VR G NP   PVAG+H+FDGDGM+H ++   G  +Y+ R+ +T+R  QE     P F K IG+L G  G+
Sbjct:   48 PCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMK-IGDLKGFFGL 152          
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.693e-19
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   12 IAGNFSPVP-EKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGI 314
            ++GNF+PV  E P  ++L   G +PDC+ G +VR G NP   PVAG+H+FDGDGM+H ++   G  SY  RF +T+RF QE       F K IG+L G  G+
Sbjct:   48 LSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMK-IGDLKGLFGL 148          
The following BLAST results are available for this feature:
BLAST of FC919323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED3_ARATH1.123e-5581.829-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED1_PHAVU1.123e-5571.339-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED9_ARATH3.611e-5479.839-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED2_ARATH7.793e-4971.909-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED5_ARATH7.294e-4761.27Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_MAIZE1.287e-4368.079-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED6_ARATH2.273e-4059.849-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD1_PHAVU1.636e-2247.62Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA8.978e-2144.34Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PEA1.693e-1946.08Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06055C04T7 PCR Citrus clementina cDNA clone C06055C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919323 ID=FC919323; Name=FC919323; organism=Citrus clementina; type=EST; length=538bp
GATTATCTTGCGATGCCCGTGTGGCCGTGAAGCTCGCCAATGGCTTTGGG
GAATACGGGGCGGCCTAAGCTACGTTCTTGAGCAAAACGGTTTGTTTCAG
TGAAACGACAAGAATAGCTGACAGAGCCTTTGTTGAATTTGACTGCATGA
ACCATGCCGTCTCCGTCGAAGAAATGGTGGCCGGCGACCGGTTCGTGAAG
TGGGTTGGCTCCGTTTCTGACGTAGACGCCTTGAATGCAGTCGGGGACCT
TTCCGGTAGTGGGAAGGTTCTGGCAGACGGGTTTTTCGGGCACCGGAGAG
AAGTTTCCGGCGATTTGGACGGTGGGGTCGGCTGTTTTGGGGAGAGGATG
CTGACGCTCTTGAGAAACCAATGCGTTTTCGACTGCGTCCAAGGCTAAAG
CTGCTGCTTTTTGTAAGAAGTTCCATTTTGAAGGGGCGAAATTGTCATTT
TCCTTGGGTTGCTGCTTANTTGTAAGAGGAGGAGAAGATGGAGGAGGGGT
ANCTGCAGGTGATGGAGGGTATTTTGGGGACTGCTTGG
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