FC920178

Overview
NameFC920178
Unique NameFC920178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_THESM (Phenylalanyl-tRNA synthetase alpha chain OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=pheS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 71/182 (39.01%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  149 KKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE-XXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTHL 691
            K+  + LT E ++ G WK +EFK +N +A  +    G   P      +++   ++MGF EM   + +E+ FWNFDALFQPQ HPARD  DT+ L+ P       E  VERVK  HE            +W    A   + R H TA+S+R L    +    P KYF+I RVFR + +DRTHL
Sbjct:  202 KEEVSILTPELIKSGGWKNVEFKHFNIHAPVKRLYPGKKQPYRTFLDKIRRKLIEMGFIEMTVESLIETQFWNFDALFQPQNHPARDWTDTYQLKYPKYGFLPDETLVERVKASHEHGWITGSRGWGYKWDPRTAMLLMPRAHATALSARQLGKGVQ---IPGKYFAIQRVFRPDVLDRTHL 380          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_SULSO (Phenylalanyl-tRNA synthetase alpha chain OS=Sulfolobus solfataricus GN=pheS PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.680e-27
Identity = 78/225 (34.67%), Postives = 121/225 (53.78%), Query Frame = 2
Query:   20 LPVQNGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAA-TDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTHL 691
            L + N        I+ LK R LI  +  K  SV       PK  +   ++L RE +  G+WK+ + K+YN  A          H   +  +++KDI + +GF+E+ T  ++E  F+NFD LFQPQ HPAR+ HD+F +E      +  +D +  VK +HE           EWK++   + +LR+ TTA ++R+   LA  P AP+K F++ +VFR +A+D THL
Sbjct:  135 LALSNLERADSNTINLLKKRGLIEEKERKIVSVELIKE--PKESEIGISNLNRELIISGEWKKYKLKKYNVEAFPPYYTISKKHYFREFLEKVKDIMISLGFKEINTG-YIEMEFYNFDLLFQPQDHPAREIHDSFSVEGSGKIED--KDLLNNVKEIHE------KFWKYEWKQDITLRLMLRSQTTATTARV---LASRPKAPQKVFTLGKVFRPDAIDATHL 345          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_UNCMA (Phenylalanyl-tRNA synthetase alpha chain OS=Uncultured methanogenic archaeon RC-I GN=pheS PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 67/176 (38.07%), Postives = 97/176 (55.11%), Query Frame = 2
Query:  167 LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVH-EXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTHL 691
            LT E +  G W+   F++++ +   Q   GG  H L      +K   ++MGF+EM     V++ F+  D LF PQ HPAR   D F L+EP     LP++ VERV+RVH +           EW    A K +LR HTT++++R    LA+    P+KYFS+ +VFRN+ +D THL
Sbjct:  197 LTPEMIATGSWQGKTFRKFDVSLPVQTEYGGRKHILRMGMDAVKRTLIEMGFKEME-GPMVDAEFYVNDLLFMPQDHPARTHWDQFNLKEPKYIHSLPQNLVERVRRVHRDGGSSGSLGWNYEWDETIARKLVLRGHTTSLTARY---LAKHSKPPQKYFSVSQVFRNDTIDVTHL 368          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_METS5 (Phenylalanyl-tRNA synthetase alpha chain OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pheS PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 81/228 (35.53%), Postives = 119/228 (52.19%), Query Frame = 2
Query:   17 LLPVQNGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELP-EDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKY--FSIDRVFRNEAVDRTHL 691
            L  +Q G   + E +  L  RKL+  +  K   V+       + + A   +T E L  G W+E EFK YN  A       G  H      +++KD+ + +GF E+ + +FVE+ F+NFD LFQPQ HPAR+ HD+F +E       LP  D V +VK VHE            W  + A + +LR+ TTAV++R+L        APK+   F+I +VFR +++D THL
Sbjct:  135 LKDLQAGKEPTGEVLEILLRRKLVEVKEEKMLRVQLLREV--ETRPAELYVTHEMLTTGSWREYEFKPYNVEANPPFFPIGKTHYFRDFIEKVKDLMVGLGFVEV-SGDFVETEFFNFDMLFQPQDHPAREIHDSFVIEGKG---NLPGSDLVRKVKEVHE------KWWRYSWSEDNARRLVLRSQTTAVTARVLSG------APKRIRAFTIGKVFRPDSIDATHL 344          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_AERPE (Phenylalanyl-tRNA synthetase alpha chain OS=Aeropyrum pernix GN=pheS PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 80/235 (34.04%), Postives = 121/235 (51.49%), Query Frame = 2
Query:    5 VKDLLLPVQNGH--ALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATD---LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPST-TRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTHL 691
            +K LL  V +G    +  E +    +R LI  +  +   +R   N A    +A  +   LTR+ L+ G+W+ L FK YN  A+         H L +  ++L+DI  ++GF E+     VE   +NFD LFQ Q HPAR+ HD+ +++ P         D VERV  VHE            W  E A++ +LR+ TTAVS+R+   LA  P  P ++F++ +VFR++AV  T L
Sbjct:  142 LKKLLENVASGSKPTVGDELLREALSRGLIRREARRSIVLRLKVNPAEALARARVEAAVLTRDMLKSGEWRRLRFKPYNVKAEPPRVLPARRHFLAEFIERLRDILRELGFREV-RGPLVELELFNFDVLFQAQDHPAREIHDSLWIKSPRRGDLSGYSDLVERVASVHE------RGWKYRWSPEVASRYILRSQTTAVSARI---LATRPNPPARFFTVGKVFRSDAVGPTRL 366          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_SULTO (Phenylalanyl-tRNA synthetase alpha chain OS=Sulfolobus tokodaii GN=pheS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 71/220 (32.27%), Postives = 116/220 (52.73%), Query Frame = 2
Query:   32 NGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTHL 691
            N    +K+ +  L  RKL++ +  K  ++R       + K A   LT E L  G+WK+   +EYN  A       G  H   +  ++L+D+   +GF+E+  +++VE  F+NFD LFQ Q HPAR+ HD+F +       +  E  ++RVK++HE            W    + + +LR+ TTA ++R+   LA  P  P + F+I +VFR +++D THL
Sbjct:  137 NPEKANKDILQQLLNRKLLIKKEEKILNIRL-IREPLEIKPALIFLTPELLASGEWKKYALREYNVEAYPPFYPIGKKHFFKEFLERLRDLMRDLGFKEV-YSDYVEIEFYNFDLLFQAQDHPAREIHDSFAISGKGKLTD--EKLIQRVKQIHE------RGWKYNWDVNISMRLMLRSQTTATTARV---LASRPKPPIRVFTIGKVFRPDSIDATHL 343          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_PYRAE (Phenylalanyl-tRNA synthetase alpha chain OS=Pyrobaculum aerophilum GN=pheS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 75/229 (32.75%), Postives = 110/229 (48.03%), Query Frame = 2
Query:    2 KVKDLLLPVQNGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTH 688
            K K L  P      + KE I     RK+   Q +   +V   P    K  +  T +T E++  G W+    K ++ N +         H   +    ++++ + +GFEE+     +E  FWNFDALFQ Q HPAR+ HDTF+++        PE  +E V RVHE           +W R++A   +LRT TTA +   ++ALAE      K F+I RVFR E +D  H
Sbjct:  134 KQKALAAPHSAPPEVLKEFIKRKLVRKIEKTQVYVKAAV---PLELVKPAEVKTVITSEDIATGRWRNYTLKPFDLNIEPPEYPAPVPHFFNEFLDYVREVMIGLGFEEV-RGPVLEVEFWNFDALFQAQDHPAREVHDTFYVQWSGPLETPPEHLMESVGRVHE------EKWRYKWDRKKALNPVLRTQTTATT---IRALAERGDGEYKVFTIGRVFRPEKLDPKH 349          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_TREPS (Phenylalanyl-tRNA synthetase alpha chain OS=Treponema pallidum subsp. pallidum (strain SS14) GN=pheS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 63/176 (35.80%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  167 LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE-XXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTHL 691
            LT E L+ G WK    + YN +        G  +      + +KD  + +GF+E      VE+ FWN DALF PQ HPARD HD ++L+ P+    +PE ++ RV   HE             + R+   + LLR+  TA+S+R L         P KYF I R FR++ VD THL
Sbjct:  263 LTVECLKSGAWKTQHLRRYNVHIPPARIIPGRSNAYADFLEHIKDRLVALGFQEFD-GPLVETDFWNADALFMPQFHPARDIHDVYYLKHPTHAPTIPEPFLSRVAATHERGADSGSLGWRYSFDRDFTRRLLLRSQGTALSARHLPT----AHIPGKYFGIARCFRHDQVDATHL 433          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_TREPA (Phenylalanyl-tRNA synthetase alpha chain OS=Treponema pallidum GN=pheS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 63/176 (35.80%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  167 LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE-XXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTHL 691
            LT E L+ G WK    + YN +        G  +      + +KD  + +GF+E      VE+ FWN DALF PQ HPARD HD ++L+ P+    +PE ++ RV   HE             + R+   + LLR+  TA+S+R L         P KYF I R FR++ VD THL
Sbjct:  263 LTVECLKSGAWKTQHLRRYNVHIPPARIIPGRSNAYADFLEHIKDRLVALGFQEFD-GPLVETDFWNADALFMPQFHPARDIHDVYYLKHPTHAPTIPEPFLSRVAATHERGADSGSLGWRYSFDRDFTRRLLLRSQGTALSARHLPT----AHIPGKYFGIARCFRHDQVDATHL 433          
BLAST of FC920178 vs. ExPASy Swiss-Prot
Match: SYFA_PYRCJ (Phenylalanyl-tRNA synthetase alpha chain OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=pheS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 65/193 (33.68%), Postives = 96/193 (49.74%), Query Frame = 2
Query:  110 YSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEEPFAPKKYFSIDRVFRNEAVDRTH 688
            Y     P  + K  +  T LT E++  G W+E   K ++ + +         H   +    ++++ + +GFEE+     +E  FWNFDALFQ Q HPAR+ HDTF++       E P   +E V RVHE           +W  ++A   +LRT TTA +   ++ALAE      K F+I RVFR E +D  H
Sbjct:  166 YVKAAAPLDSVKPAEVKTALTSEDIATGRWREYYLKPFDLSIEPPQYPAPVPHFFNEFLNYVREVMVGLGFEEV-RGPILEVEFWNFDALFQAQDHPAREVHDTFYVHWDGPREEPPRHLMEAVGRVHE------EKWRYKWSPQKALNLVLRTQTTATT---IRALAERGEGAYKVFTIGRVFRPEKLDPKH 348          
The following BLAST results are available for this feature:
BLAST of FC920178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
SYFA_THESM2.817e-2739.01Phenylalanyl-tRNA synthetase alpha chain OS=Thermo... [more]
SYFA_SULSO3.680e-2734.67Phenylalanyl-tRNA synthetase alpha chain OS=Sulfol... [more]
SYFA_UNCMA1.546e-2538.07Phenylalanyl-tRNA synthetase alpha chain OS=Uncult... [more]
SYFA_METS51.546e-2535.53Phenylalanyl-tRNA synthetase alpha chain OS=Metall... [more]
SYFA_AERPE5.874e-2534.04Phenylalanyl-tRNA synthetase alpha chain OS=Aeropy... [more]
SYFA_SULTO4.210e-2332.27Phenylalanyl-tRNA synthetase alpha chain OS=Sulfol... [more]
SYFA_PYRAE4.210e-2332.75Phenylalanyl-tRNA synthetase alpha chain OS=Pyroba... [more]
SYFA_TREPS2.089e-2235.80Phenylalanyl-tRNA synthetase alpha chain OS=Trepon... [more]
SYFA_TREPA2.089e-2235.80Phenylalanyl-tRNA synthetase alpha chain OS=Trepon... [more]
SYFA_PYRCJ6.079e-2233.68Phenylalanyl-tRNA synthetase alpha chain OS=Pyroba... [more]

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Properties
Property NameValue
Genbank descriptionC32005A06EF RVDevelop1 Citrus clementina cDNA clone C32005A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920178 ID=FC920178; Name=FC920178; organism=Citrus clementina; type=EST; length=692bp
AAAAGTCAAAGATTTGCTTCTACCAGTACAAAATGGACATGCGCTTAGCA
AAGAGGAGATTAGCAGTCTCAAAGCACGGAAGCTTATTGTTCCCCAGACA
TGGAAGGGGTACTCAGTGAGAAAAGGTCCTAATTATGCTCCCAAAAGGAA
GAAAGCTGCTACAGATTTGACTCGAGAGAACCTTCAGAAGGGTGATTGGA
AGGAATTGGAGTTCAAAGAGTACAACTTCAATGCTAAAGGACAGCCTGCG
GAAGGTGGCCATCTTCACCCACTGCTCAAGGTGCGGAAGCAATTGAAGGA
CATATTTCTCCAGATGGGTTTTGAGGAGATGCCGACAAACAATTTTGTTG
AAAGCAGCTTCTGGAACTTTGATGCATTATTCCAGCCACAACAACACCCT
GCCCGTGATTCTCATGATACCTTCTTTCTGGAAGAACCTTCCACTACAAG
GGAACTACCAGAAGATTATGTTGAGCGGGTGAAGCGTGTGCACGAGTCTG
GTGGTTATGGGTCCAGAGGATATGGATATGAGTGGAAAAGAGAGGAAGCA
AACAAAAACCTTCTGCGAACTCATACAACTGCTGTCTCTTCCAGGATGCT
TAAGGCACTAGCTGAAGAACCTTTTGCCCCGAAAAAGTATTTCTCCATAG
ATCGTGTTTTCAGAAATGAAGCTGTTGATCGAACTCATCTTG
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