FC920182

Overview
NameFC920182
Unique NameFC920182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 2.810e-34
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.810e-34
Identity = 76/143 (53.15%), Postives = 96/143 (67.13%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  ++   + G K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMFV+GVN   YK ++
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSENGLDVDG-KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSDI 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.810e-34
Identity = 73/143 (51.05%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   78 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 506
            GK+KIGINGFGRIGRLV R  + R D+E+VA+NDPFI  +YM YMFKYDSVH  W  H    KD    L   + +  F   +P +I W   GA+ V+ESTGVFT               VII+APS DAPM+V+GVN  +Y P
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKDG--FLVEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAKATAHLTGGAKKVIITAPSNDAPMYVMGVNHEKYNP 143          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 3.670e-34
Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.670e-34
Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.670e-34
Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            KIGINGFGRIGRLV R  L     ++VAVNDPFI  +YM YMFKYDS HG +K  E+K++D   ++ G+K +TVF    PE IPW++ GAEY+VESTGVFT               V+ISAPS DAPMFV GVN  +Y  ++
Sbjct:    2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFKG-EVKMEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPSADAPMFVCGVNLEKYSKDM 140          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 3.670e-34
Identity = 74/143 (51.75%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG ++   +K ++ K ++ G   +T+F  R+P  I WA+ GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGHFR-GTVKAENGKLVING-NAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 3.670e-34
Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.793e-34
Identity = 75/143 (52.45%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            VK+GINGFG IGRLV R       V++VA+NDPFI  DYM YMFKYDS HG++K   +K ++ K L+  ++ +TVF  R+P  I W + GA YVVESTGVFT               V+ISAPS DAPMFVVGVN  +Y+  L
Sbjct:    2 VKVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHGRFK-GTVKAENGK-LIINDQVITVFQERDPSSIKWGDAGAVYVVESTGVFTTTEKASLHLKGGAKRVVISAPSADAPMFVVGVNHEKYENSL 142          
BLAST of FC920182 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.793e-34
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 512
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFK-GTVKAENGKLVING-NAITIFQERDPSNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
The following BLAST results are available for this feature:
BLAST of FC920182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P_RABIT2.810e-3451.75Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_COCP72.810e-3453.15Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PC_CHLRE2.810e-3451.05Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_SPECI3.670e-3451.05Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_MUSPF3.670e-3451.05Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_HOMAM3.670e-3454.23Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_COLLI3.670e-3451.75Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_CANFA3.670e-3451.05Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P_XENLA4.793e-3452.45Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_COTJA4.793e-3451.75Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]

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Properties
Property NameValue
Genbank descriptionC32005A10EF RVDevelop1 Citrus clementina cDNA clone C32005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920182 ID=FC920182; Name=FC920182; organism=Citrus clementina; type=EST; length=512bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTAC
AAACCAGAGCTC
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