FC920186

Overview
NameFC920186
Unique NameFC920186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12599 contig Ccv1_Contig12599:46..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.428e-39
Identity = 80/135 (59.26%), Postives = 98/135 (72.59%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI-----------GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQR 667
            LKNYMDAQY+GEIGIGTPPQ FTV+FDTGSSNLWVPS  C    IAC+ H KY S +SSTY KNG S DIHYG+G++SG+ S+D V +           G + V+ Q F EAT++P +TF+ AKFDGILG+ + R
Sbjct:   71 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCQSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPR 205          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 80/134 (59.70%), Postives = 98/134 (73.13%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFF-SEDHVK---------IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQR 667
            LKNYMDAQY+GEIGIGTPPQ FTV+FDTGSSNLWVPS  C    IAC+ H KY SG+SSTY KNG +  IHYG+G++SG+  S+D V          +G + V+ Q F EAT++P LTF+ AKFDGILG+ + R
Sbjct:    7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTTFAIHYGSGSLSGYLSSQDTVSVPCNSALSGVGGIKVERQTFGEATKQPGLTFIAAKFDGILGMAYPR 140          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 88/181 (48.62%), Postives = 116/181 (64.09%), Query Frame = 2
Query:  152 IGLKKRKFDLNNRVAARLD-SKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHV---------KIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            I +  RKF    R    +  S E    +  I KYS++ +  ++ +     LKNY+DAQY+G+IGIGTPPQ FTV+FDTGSSNLWVPS  C    IAC+ H KY S +SSTY KNG S DIHYG+G++SG+ S+D V         K   + V+ Q F EAT++P + F+ AKFDGILG+G+
Sbjct:   22 IRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSS-PKTTEPVSELLKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILGMGY 201          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.593e-38
Identity = 74/124 (59.68%), Postives = 93/124 (75.00%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFS-IACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQR 667
            LKNYMDAQY+GEIG+GTP Q FTV+FDTGSSNLW+PS  C F+ IAC  H KY   +SSTY KNG    I YG+G++SG+ S+D   IGD+VV+ Q F EA ++P + F+ AKFDGILG+ + R
Sbjct:   68 LKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAYPR 191          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.835e-38
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI---------GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQR 667
            LKNYMDAQY+GEIGIGTPPQ FTV+FDTGS+NLWVPS  C    IAC+ H KY S +SSTY KNG + DIHYG+G++SG+ S+D V +         G + V+ Q F EA ++P + F+ AKFDGILG+ + R
Sbjct:   51 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPR 183          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.280e-37
Identity = 80/153 (52.29%), Postives = 102/153 (66.67%), Query Frame = 2
Query:  239 IRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC-YFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI---------GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQR 667
            I KY+ R      G    + L NYMDAQY+GEIGIGTPPQ FTV+FDTGS+NLWVPS  C    IAC+ H KY S +SSTY KNG + DIHYG+G++SG+ S+D V +         G + V+ Q F EA ++P + F+ AKFDGILG+ + R
Sbjct:   27 ISKYATREPAVRQGPIPEL-LTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPR 178          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP_YEAST (Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 73/123 (59.35%), Postives = 91/123 (73.98%), Query Frame = 2
Query:  293 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            V L NY++AQY+ +I +GTPPQNF VI DTGSSNLWVPS++C  S+AC+ HSKY    SS+YK NG    I YGTG++ G+ S+D + IGDL +  Q+F EAT EP LTF   KFDGILGLG+
Sbjct:   81 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG-SLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGY 202          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.079e-37
Identity = 81/149 (54.36%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  221 ESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSI-ACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQ 664
            ES R   +K+S R +   +G    + + ++ DAQY+G I IGTP Q F V+FDTGSSNLW+PS KC  ++ AC  H+KY SG SSTY  NG    I YG+GA+SGF S+D V +G L VKDQ F EAT EP + F  AKFDGILGL FQ
Sbjct:   31 ESRRRVPQKWSNRLSALNAGTT--IPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGILGLAFQ 177          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARP_ASPFU (Vacuolar protease A OS=Aspergillus fumigatus GN=pep2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.633e-37
Identity = 80/173 (46.24%), Postives = 106/173 (61.27%), Query Frame = 2
Query:  143 LYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L ++ L ++ +  N     R   ++    R ++ +  L  N         V + N+++AQYF EI +GTPPQ F V+ DTGSSNLWVP S C  SIAC+ H+KY S  SSTYK NG    I YG+G +SGF S+D ++IGDL V  Q+F EAT EP L F   +FDGILGLG+
Sbjct:   25 LNKVPLDEQLYTHNIDAHVRALGQKYMGIRPNVHQELLEENSLNDMSRHDVLVDNFLNAQYFSEISLGTPPQKFKVVLDTGSSNLWVPGSDCS-SIACFLHNKYDSSASSTYKANGTEFAIKYGSGELSGFVSQDTLQIGDLKVVKQDFAEATNEPGLAFAFGRFDGILGLGY 196          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.663e-37
Identity = 72/122 (59.02%), Postives = 92/122 (75.41%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFS-IACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L NY+DAQY+G I IGTPPQ+F V+FDTGSSNLWVPS +C F+ IAC  H+KY + +SST++KNG +  I YG+G++SG+ S D V +G + V  Q F EA  EP L F+ AKFDGILGLG+
Sbjct:   60 LSNYLDAQYYGAITIGTPPQSFKVVFDTGSSNLWVPSKECSFTNIACLMHNKYNAKKSSTFEKNGTAFHIQYGSGSLSGYLSTDTVGLGGVSVTKQTFAEAINEPGLVFVAAKFDGILGLGY 181          
The following BLAST results are available for this feature:
BLAST of FC920186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CATD_HUMAN1.428e-3959.26Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_PIG2.062e-3859.70Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
CATD_MOUSE2.062e-3848.62Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_CLUHA4.593e-3859.68Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_BOVIN7.835e-3857.14Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_SHEEP2.280e-3752.29Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CARP_YEAST2.977e-3759.35Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4... [more]
CATD_DICDI5.079e-3754.36Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
CARP_ASPFU6.633e-3746.24Vacuolar protease A OS=Aspergillus fumigatus GN=pe... [more]
ASPP_AEDAE8.663e-3759.02Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]

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Properties
Property NameValue
Genbank descriptionC32005B02EF RVDevelop1 Citrus clementina cDNA clone C32005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920186 ID=FC920186; Name=FC920186; organism=Citrus clementina; type=EST; length=690bp
GTCTGCTCCAAGCATTTCTCTGTCTCGATCATCGAAAGAGACTTTACTTG
TCAACATGGGAACGGTATTCAAATCTATTACAGCCGGTTTCTTCCTTTGT
TTGCTTCTGTTTCCTGTGGTGTTCTCGACACCAAACGGTGGGTTATACAG
AATCGGACTTAAAAAGAGGAAGTTTGACCTGAACAACAGAGTGGCTGCCC
GCCTTGACTCCAAGGAAGGAGAGTCATTCAGAACTTCTATCAGAAAATAT
TCTCTTCGTGGAAACTTAGGAGAGTCAGGGGATGCTGATATTGTTGCGCT
GAAGAACTACATGGATGCTCAGTACTTTGGTGAGATTGGTATTGGCACAC
CCCCGCAAAATTTCACTGTGATATTTGACACTGGTAGTTCAAATTTGTGG
GTGCCCTCTTCTAAGTGTTATTTCTCGATTGCATGCTATTTCCATTCCAA
GTACAGGTCAGGCCGCTCAAGTACCTACAAGAAGAATGGTAAATCGGCTG
ATATCCATTATGGAACTGGAGCTATTTCTGGTTTTTTTAGCGAAGACCAT
GTCAAAATCGGTGATCTTGTGGTCAAAGATCAGGAATTTATTGAGGCAAC
TAGGGAGCCCAGCCTCACTTTCTTGCTGGCCAAGTTTGATGGCATACTTG
GACTTGGCTTCCAGAGATTTCTGTTTGAAAGCTGTGCCCG
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