FC920186

Overview
NameFC920186
Unique NameFC920186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12599 contig Ccv1_Contig12599:46..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PAG2_BOVIN (Pregnancy-associated glycoprotein 2 OS=Bos taurus GN=PAG2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 68/162 (41.98%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  203 LDSKEGESFRTSIRKYSLRGNLGES-------GDADIVA--LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            L  K+ ++ R ++R+ +L  N  E         D+ I    L+NY+D  Y G I IGTPPQ F V+FDTGS+NLWVP   C  S ACY H  +    SS++++ G    I YG+G I GF   D V+IG+LV  +Q F  +  E     L   FDGILGL F
Sbjct:   19 LPLKKMKTLRETLREKNLLNNFLEEQAYRLSKNDSKITIHPLRNYLDTAYVGNITIGTPPQEFRVVFDTGSANLWVPCITC-TSPACYTHKTFNPQNSSSFREVGSPITIFYGSGIIQGFLGSDTVRIGNLVSPEQSFGLSLEEYGFDSL--PFDGILGLAF 177          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 2
Query:  281 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQRFLFE 679
            D     L+NY+D  Y G I IGTPPQ F V+ DTGS++LWVPS  C  S AC  H+ +    SST+  +G+  +I YG+G +SGF + D V+I  LV   Q F  + +EP      A FDGILGL +    FE
Sbjct:   60 DVSFEPLRNYLDLAYIGIISIGTPPQEFKVVLDTGSADLWVPSIYC-SSPACGKHNTFNPLLSSTFLVSGRPINIVYGSGRMSGFLAYDTVQIAGLVDVAQAFGLSLQEPGKFMEYAVFDGILGLSYPSLSFE 191          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PLM1_PLAFA (Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 63/150 (42.00%), Postives = 91/150 (60.67%), Query Frame = 2
Query:  227 FRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPSLTFLLAKFDGILGLGFQ 664
            F+T + +    GN G+S     V L +  +  Y+GE  IG   Q F  IFDTGS+NLWVPS++C  +I C   + Y S +S TY+K+G   +++Y +G +SGFFS+D V I +L     +FIE T     EP+ T  L +FDGI+GLG++
Sbjct:  112 FKTGLTQKPHLGNAGDS-----VTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSF-PYKFIEVTDTNGFEPAYT--LGQFDGIVGLGWK 252          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PLM1_PLAF7 (Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0076 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 63/150 (42.00%), Postives = 91/150 (60.67%), Query Frame = 2
Query:  227 FRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATR----EPSLTFLLAKFDGILGLGFQ 664
            F+T + +    GN G+S     V L +  +  Y+GE  IG   Q F  IFDTGS+NLWVPS++C  +I C   + Y S +S TY+K+G   +++Y +G +SGFFS+D V I +L     +FIE T     EP+ T  L +FDGI+GLG++
Sbjct:  112 FKTGLTQKPHLGNAGDS-----VTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSF-PYKFIEVTDTNGFEPAYT--LGQFDGIVGLGWK 252          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PAG1_PIG (Pregnancy-associated glycoprotein 1 OS=Sus scrofa GN=PAG1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 59/141 (41.84%), Postives = 85/141 (60.28%), Query Frame = 2
Query:  239 IRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 661
            I+K+ L+G+L  S     + L NY+D  Y G I IGTPPQ F+VIFDT SS+LWVPS++C+ S AC  H  +    SST++ + ++  +   +G +SG    D V+IG    ++Q F  +  EP      A FDG+LGLG+
Sbjct:   49 IQKFGLKGSLC-SPKISCLRLWNYLDMVYVGNITIGTPPQLFSVIFDTASSDLWVPSNQCH-SRACVTHRSFNPTLSSTFQSSNRTVKLAPHSGLVSGLLGYDTVQIGRFKSENQAFGLSQSEPVKELENAFFDGVLGLGY 187          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 64/131 (48.85%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  272 ESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQ 664
            +SG A +VAL N  D  YFGEIGIGTPPQ FTVIFDTGSS LWVPSSK         HS Y S  SSTY                                K+Q+FIEAT E    FL   FDGILGL FQ
Sbjct:    1 DSGSA-VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKA--------HSMYESSGSSTY--------------------------------KEQDFIEATDETDNVFLHRLFDGILGLSFQ 90          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PAG1_SHEEP (Pregnancy-associated glycoprotein 1 OS=Ovis aries GN=PAG1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 64/168 (38.10%), Postives = 88/168 (52.38%), Query Frame = 2
Query:  188 RVAARLDSKEGESFRTSIRK---YSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSI--ACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQRFLF 676
            RV    ++  G+    S  K   Y L      + +  I  L+N MD  Y G I IGTPPQ F V+FDTGSS+L VPS  C       C    K++  +SST++    +  I++G+G + GF + D V+IGDLV  DQ F     E   ++L   FDGILGL + +  F
Sbjct:   23 RVKTMRNTLSGKKMLNSFLKEHAYRLSQISFRASNLTIHPLRNIMDMLYVGNITIGTPPQEFQVVFDTGSSDLLVPSINCLSPTKRPCSKQDKFKHHQSSTFRFTNDTFRIYFGSGTMRGFVAHDTVRIGDLVSTDQPFGLIFLE---SWLDIPFDGILGLNYPKISF 187          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 61/125 (48.80%), Postives = 64/125 (51.20%), Query Frame = 2
Query:  290 IVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQ 664
            +VAL N  D  YFGEIGIGTPPQ FTVIFDTGSS LWVPSSK         HS Y S  SSTY                                K+Q+FIEAT E    FL   FDGILGL FQ
Sbjct:    6 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSYLWVPSSKA--------HSMYESSDSSTY--------------------------------KEQDFIEATEEADNVFLNRLFDGILGLSFQ 90          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.307e-20
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  299 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQRFLF 676
            L+N  D  Y G I IGTPPQ F V+FDT SS+LWVPS  C  S AC  H ++R  +SST++   K+  I YG+G + G    D V+IG+LV  DQ F  +  E      +  +DG+LGL +    F
Sbjct:   63 LRNIKDLVYMGNITIGTPPQEFQVVFDTASSDLWVPSDFC-TSPACSTHVRFRHLQSSTFRLTNKTFRITYGSGRMKGVVVHDTVRIGNLVSTDQPFGLSIEEYGFEGRI--YDGVLGLNYPNISF 185          
BLAST of FC920186 vs. ExPASy Swiss-Prot
Match: PLM2_PLAFA (Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 2
Query:  266 LGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEA--TREPSLTFLLAKFDGILGLGFQ 664
            LG S D   + L ++ +  ++G+  +G   Q FT I DTGS+NLWVPS KC  +  C     Y S +S TY+K+G   +++Y +G +SGFFS+D V +G+L +   +FIE   T     T+  + FDGILGLG++
Sbjct:  123 LGSSNDN--IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKC-TTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSL-PYKFIEVIDTNGFEPTYTASTFDGILGLGWK 253          
The following BLAST results are available for this feature:
BLAST of FC920186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PAG2_BOVIN7.607e-2541.98Pregnancy-associated glycoprotein 2 OS=Bos taurus ... [more]
PEPAF_RABIT4.174e-2345.11Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
PLM1_PLAFA1.214e-2242.00Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2[more]
PLM1_PLAF71.214e-2242.00Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7... [more]
PAG1_PIG3.533e-2241.84Pregnancy-associated glycoprotein 1 OS=Sus scrofa ... [more]
CARDH_CYNCA1.939e-2048.85Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PAG1_SHEEP2.532e-2038.10Pregnancy-associated glycoprotein 1 OS=Ovis aries ... [more]
CARDG_CYNCA2.532e-2048.80Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PAG1_BOVIN3.307e-2043.65Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
PLM2_PLAFA7.368e-2040.74Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32005B02EF RVDevelop1 Citrus clementina cDNA clone C32005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920186 ID=FC920186; Name=FC920186; organism=Citrus clementina; type=EST; length=690bp
GTCTGCTCCAAGCATTTCTCTGTCTCGATCATCGAAAGAGACTTTACTTG
TCAACATGGGAACGGTATTCAAATCTATTACAGCCGGTTTCTTCCTTTGT
TTGCTTCTGTTTCCTGTGGTGTTCTCGACACCAAACGGTGGGTTATACAG
AATCGGACTTAAAAAGAGGAAGTTTGACCTGAACAACAGAGTGGCTGCCC
GCCTTGACTCCAAGGAAGGAGAGTCATTCAGAACTTCTATCAGAAAATAT
TCTCTTCGTGGAAACTTAGGAGAGTCAGGGGATGCTGATATTGTTGCGCT
GAAGAACTACATGGATGCTCAGTACTTTGGTGAGATTGGTATTGGCACAC
CCCCGCAAAATTTCACTGTGATATTTGACACTGGTAGTTCAAATTTGTGG
GTGCCCTCTTCTAAGTGTTATTTCTCGATTGCATGCTATTTCCATTCCAA
GTACAGGTCAGGCCGCTCAAGTACCTACAAGAAGAATGGTAAATCGGCTG
ATATCCATTATGGAACTGGAGCTATTTCTGGTTTTTTTAGCGAAGACCAT
GTCAAAATCGGTGATCTTGTGGTCAAAGATCAGGAATTTATTGAGGCAAC
TAGGGAGCCCAGCCTCACTTTCTTGCTGGCCAAGTTTGATGGCATACTTG
GACTTGGCTTCCAGAGATTTCTGTTTGAAAGCTGTGCCCG
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