FC920189

Overview
NameFC920189
Unique NameFC920189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15182 contig Ccv1_Contig15182:112..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.347e-37
Identity = 82/214 (38.32%), Postives = 123/214 (57.48%), Query Frame = 2
Query:   38 LNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 673
            L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L+
Sbjct:   12 LEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALN 223          
BLAST of FC920189 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.948e-34
Identity = 76/201 (37.81%), Postives = 119/201 (59.20%), Query Frame = 2
Query:   77 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 673
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+            +  +N    ++ VDE TI +  ILG T TG+F+D+  L+
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLN 221          
The following BLAST results are available for this feature:
BLAST of FC920189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO6.347e-3738.32Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO2.948e-3437.81Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionC32005B07EF RVDevelop1 Citrus clementina cDNA clone C32005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920189 ID=FC920189; Name=FC920189; organism=Citrus clementina; type=EST; length=675bp
GGTGATTTCAACAACAGAAACAGACCCCAGGGAGATTTTGAACTCCACAT
TTGCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCAAGATGCCAGAT
AATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGCTGAT
GTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACTTGGA
TGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAACTAT
GTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGTGTGT
GAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAGACTG
CAGTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGCTGGC
TTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAAACC
CTATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGCTGGG
AGAAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAACTGGAA
GAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAGATGA
GAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGAGAAT
TTGAGGATGTTAAGCTTCTTCATGA
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