FC920191

Overview
NameFC920191
Unique NameFC920191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig442 contig Ccv1_Contig442:525..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45
Identity = 86/130 (66.15%), Postives = 104/130 (80.00%), Query Frame = 3
Query:   18 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFD 407
            L QKKAHLMEIQVNGGSVA KV++A   FEK + I + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N KIY++G A  ++ +A T+FD
Sbjct:  171 LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFD 299          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 76/121 (62.81%), Postives = 102/121 (84.30%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            K+   +QKKAH+ME+Q+NGG+VA+KV +A    EKQ+P+ +VF ++E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKIY++G+
Sbjct:  169 KLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGR 289          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 83/135 (61.48%), Postives = 103/135 (76.30%), Query Frame = 3
Query:   21 KQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE------SHSAMTEFD 407
            +QKKAH+MEIQ+NGGS+  KV +A    EK I +  VF +DEMID +GVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKKIY++G            ++A TE+D
Sbjct:  174 RQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYD 308          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 6.700e-43
Identity = 76/121 (62.81%), Postives = 101/121 (83.47%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            K+   +QKKAH+MEIQ+NGG+VA+KV +A    EKQ+P+ +VF + E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKI+++G+
Sbjct:  169 KLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGR 289          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.017e-39
Identity = 77/133 (57.89%), Postives = 102/133 (76.69%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFD 407
            +KGL  KKAH+ EIQVNGGS+++KV++A G  EK+I I  VF  +E ID IGVTKGKG++G V R+GV + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK++Y +G  S    +  TEFD
Sbjct:  164 IKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSS---NIKTEFD 293          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.937e-35
Identity = 64/86 (74.42%), Postives = 78/86 (90.70%), Query Frame = 3
Query:  111 QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            ++P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPAR +F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct:    1 RVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQ 86          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.558e-26
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 3
Query:   24 QKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            +KK  +ME  V G S+ +K ++      K+I +  + Q+ E++DI+ VTKGKG +G V RWGV     K  +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+
Sbjct:  172 KKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGE 286          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = 3
Query:   24 QKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            +KK  +ME  + G SV +K ++      K+I +  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+
Sbjct:  175 KKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 289          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 3
Query:   24 QKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFD 407
            +KK  +ME  + G SV +K ++      K++ +  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+  +      TE +
Sbjct:  177 KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLKLDENTEIE 304          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 3
Query:   24 QKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            +KK  +ME  + G SV +K ++      K++ +  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+
Sbjct:  174 KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 288          
The following BLAST results are available for this feature:
BLAST of FC920191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3A_SCHPO5.481e-4566.1560S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3L_BOVIN2.303e-4362.8160S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_DROME3.928e-4361.4860S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3L_HUMAN6.700e-4362.8160S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_ENCCU2.017e-3957.8960S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_PIG3.937e-3574.4260S ribosomal protein L3 (Fragment) OS=Sus scrofa ... [more]
RL3_THESM2.558e-2647.8350S ribosomal protein L3P OS=Thermococcus sibiricu... [more]
RL3_PYRHO1.833e-2445.2250S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]
RL3_PYRFU1.833e-2441.4150S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]
RL3_PYRAB3.127e-2444.3550S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32005B10EF RVDevelop1 Citrus clementina cDNA clone C32005B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920191 ID=FC920191; Name=FC920191; organism=Citrus clementina; type=EST; length=723bp
GCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATC
CAGGTCAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTT
CTTCGAGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGA
TTGACATTATTGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACT
CGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAA
GGTTGCTTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTG
CTAGAGCTGGGCAGAACGGTTACCATCACCGTACAGAGATGAACAAGAAA
ATTTACAAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGA
ATTTGACAGGTCGGTATATCTGTTATCTTCTTTAATGGGTTCTTTTTCTT
CTTGAGATCTATATTGTTTATTTTAGGTGTATGTGAATTGTTAAGTTGGG
TGAGTTCGAGTAAGGTTGGGTAAGAGCGGGTGGGAACTAGTTGATATTTT
TCCAACCTTTTTTGTTGACCTTTTCTGACCTTTGTTGGCCCCTGCACTTA
AAAAACCGCCAGGTACATGTTTGGCTCCATTTTGTGGCTGAATATTTTTT
TTTATTGTATTATATAGTCATTTCATCATTTAAAGCATGTGGACAGCTGT
CAAGACTTTGCAGTATTCATAGC
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