FC920191

Overview
NameFC920191
Unique NameFC920191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig442 contig Ccv1_Contig442:525..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K  G+ +KK  ++EI+V G SVA+K+ +A     K + I+ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK+I KLG    E
Sbjct:  147 KTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K  G+ +KK  ++EI+V G SVA+K+ +A     K + I+ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK+I KLG    E
Sbjct:  147 KTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K  G+ +KK  +ME ++ G  V ++ ++A     ++I    VF + E++D+  +TKGKG++GVV RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK+I K+G+  +E
Sbjct:  154 KKAGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE 280          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K+  L +KK  ++EI++ G  + +++++A     KQ+ I  VFQ+ E++D IGVTKGKG++G V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK+I K+G    E
Sbjct:  148 KLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE 274          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLG 365
            R + G+ +K   +MEI V G SV +++  A G    Q+ +  +F   E ID+  VTKGKG +G V RWG+    RK  R   LR V  +G WHPAR+S+ V + GQ GYH RTE NK+I  +G
Sbjct:  146 RLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIG 268          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E
Sbjct:  147 KTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E
Sbjct:  147 KTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E
Sbjct:  147 KTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 3
Query:    6 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E
Sbjct:  147 KTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 3
Query:   15 GLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            G+ +K   +ME ++ GG+V + +D+A     K+I +  VF +  +ID+I VTKGKG++G V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ K+G+  +E
Sbjct:  148 GVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE 270          
The following BLAST results are available for this feature:
BLAST of FC920191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METVS2.027e-2344.8850S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA2.027e-2344.8850S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METKA1.006e-2242.5250S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_METJA1.716e-2241.7350S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_METTP2.241e-2243.9050S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_METMP6.519e-2240.9450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM76.519e-2240.9450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM66.519e-2240.9450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM58.515e-2240.9450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_ARCFU2.477e-2141.9450S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionC32005B10EF RVDevelop1 Citrus clementina cDNA clone C32005B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920191 ID=FC920191; Name=FC920191; organism=Citrus clementina; type=EST; length=723bp
GCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATC
CAGGTCAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTT
CTTCGAGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGA
TTGACATTATTGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACT
CGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAA
GGTTGCTTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTG
CTAGAGCTGGGCAGAACGGTTACCATCACCGTACAGAGATGAACAAGAAA
ATTTACAAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGA
ATTTGACAGGTCGGTATATCTGTTATCTTCTTTAATGGGTTCTTTTTCTT
CTTGAGATCTATATTGTTTATTTTAGGTGTATGTGAATTGTTAAGTTGGG
TGAGTTCGAGTAAGGTTGGGTAAGAGCGGGTGGGAACTAGTTGATATTTT
TCCAACCTTTTTTGTTGACCTTTTCTGACCTTTGTTGGCCCCTGCACTTA
AAAAACCGCCAGGTACATGTTTGGCTCCATTTTGTGGCTGAATATTTTTT
TTTATTGTATTATATAGTCATTTCATCATTTAAAGCATGTGGACAGCTGT
CAAGACTTTGCAGTATTCATAGC
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