FC920191

Overview
NameFC920191
Unique NameFC920191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig442 contig Ccv1_Contig442:525..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 49/125 (39.20%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   15 GLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            G+ +K   ++EI V G  ++ ++  +A G   K++    VF+  +++D+IGVTKGKG +GV+ R+GV  LPR  K  +G R+   +G   PA V +T  R GQ G+H RTE NK+I K+     E
Sbjct:  159 GVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRRTGTVGP-KPA-VMYTQPRMGQMGFHRRTEYNKRILKISDNGSE 281          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 42/128 (32.81%), Postives = 72/128 (56.25%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            + + G+ +K   +ME  ++   +  K ++A       + +  VF+   ++D   +T GKG +G V RWG+     K  R   LR++  +G+++P+RVS+ V + GQ GYH RTE NK+I K+G   +E
Sbjct:  150 KSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGKGTQGPVKRWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE 277          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METS5 (50S ribosomal protein L3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 3
Query:   18 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKL 362
            L +K   ++E+Q+ GG+   ++++        + +  VF++ +++DIIGVTKG G++GV+ R+GV  LPR  K  +G RKV   G          V + GQ G+H RTE NK+I K+
Sbjct:  161 LGKKTPDIVEVQIGGGNTKNQLEYGLKLLGNTLSVRDVFKEGQLMDIIGVTKGHGFQGVIKRYGVQELPRWHKHRKGSRKVGTKGP--SLGTPSYVPQPGQMGFHRRTEYNKRILKI 275          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            + + G+ +K   +ME  ++   +  K ++A       + I  VF+   +ID   +T GKG +G   RWG+  +  K  R   LR++  +G +   RVS+ V + GQ GYH RTE NK+I K+G   +E
Sbjct:  150 KSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAITIGKGTQGPAKRWGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE 277          
The following BLAST results are available for this feature:
BLAST of FC920191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_CALMQ1.407e-1639.2050S ribosomal protein L3P OS=Caldivirga maquilinge... [more]
RL3_METMA1.837e-1632.8150S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METS52.653e-1536.7550S ribosomal protein L3P OS=Metallosphaera sedula... [more]
RL3_METBF5.910e-1532.8150S ribosomal protein L3P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionC32005B10EF RVDevelop1 Citrus clementina cDNA clone C32005B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920191 ID=FC920191; Name=FC920191; organism=Citrus clementina; type=EST; length=723bp
GCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATC
CAGGTCAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTT
CTTCGAGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGA
TTGACATTATTGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACT
CGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAA
GGTTGCTTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTG
CTAGAGCTGGGCAGAACGGTTACCATCACCGTACAGAGATGAACAAGAAA
ATTTACAAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGA
ATTTGACAGGTCGGTATATCTGTTATCTTCTTTAATGGGTTCTTTTTCTT
CTTGAGATCTATATTGTTTATTTTAGGTGTATGTGAATTGTTAAGTTGGG
TGAGTTCGAGTAAGGTTGGGTAAGAGCGGGTGGGAACTAGTTGATATTTT
TCCAACCTTTTTTGTTGACCTTTTCTGACCTTTGTTGGCCCCTGCACTTA
AAAAACCGCCAGGTACATGTTTGGCTCCATTTTGTGGCTGAATATTTTTT
TTTATTGTATTATATAGTCATTTCATCATTTAAAGCATGTGGACAGCTGT
CAAGACTTTGCAGTATTCATAGC
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