FC920196

Overview
NameFC920196
Unique NameFC920196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGS 640
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +  +IYC  +G+AAD +A+ DM + QL+LH         V+ A  +++   + Y+  + A L++ G D            G     PFA  GSGS
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGS 151          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGS 640
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   IYC  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D   G  ++     G     PFA  GSGS
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGTM-GGMLIRQPFAIGGSGS 151          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 42/142 (29.58%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  245 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYP-HGSTDTLPFANMGSGSLAAMAMFE 664
            GTT VGL+ +DGV++  + RAT G  +  K  +KI+ +A  +    AG+  D + +  ++  +  L+     R+  V    TL    L +Y+ +     L++GG+D  G  +++I P  G+ +       GSGSL A  + E
Sbjct:   11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLE 152          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 559
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 559
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 559
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 559
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  242 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 559
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 42/150 (28.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  245 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTI-YPHGSTDTLPFANMGSGSLAAMAMFEIKXQEGL 685
            GTT VG++  DG++L ++ RAT G  +  K  +K++ +   +    AG+  D + +  +VS + QL++     ES  +  +T L  +  +   Y  +   L++GGVD  GP ++++    GS +    +  GSGS  A  + E + +E +
Sbjct:    9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENM 157          
BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 48/150 (32.00%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  245 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-----FNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFEIKXQE 679
            GTT VGL+ ++GV+L ADTRA+ G I+  KN  KIH +  ++   GAG   D   +  ++ ++  L++   G+E  V    TLL   L     F Y G+     ++GG D   P L ++   G      +A  GSG   A ++ + + +E
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW----FLVGGYD-EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYRE 154          
The following BLAST results are available for this feature:
BLAST of FC920196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSB9_BOVIN1.927e-1232.33Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSB9_RAT2.516e-1233.58Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSMB_ARCFU9.562e-1229.58Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSB9_MUSSI9.562e-1233.02Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSPL9.562e-1233.02Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_MUSMB9.562e-1233.02Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MUSDU9.562e-1233.02Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE9.562e-1233.02Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSMB_METTE1.249e-1128.00Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_PYRFU3.633e-1132.00Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32005C04EF RVDevelop1 Citrus clementina cDNA clone C32005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920196 ID=FC920196; Name=FC920196; organism=Citrus clementina; type=EST; length=686bp
CTTGCCGGGGATCCTTTCTTTCGTTTTAAGTTTCTAAGACTCGAAGTCGC
TCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAGTG
GGATCAATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATAGA
TGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGATA
TGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGACG
ACCATTGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGATAC
CAGAGCAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAATTC
ATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTGAC
ACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGTTA
TCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAAGA
AGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTGGT
GGAGTTGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGTTC
AACTGACACTTTACCATTTGCGAACATGGGTTCTGGTTCTCTTGCTGCCA
TGGCTATGTTTGAAATCAAATANCAAGAAGGCCTGA
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