FC920196

Overview
NameFC920196
Unique NameFC920196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920196 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = 2 
Query:  245 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD-CTGPHLHTIYP-HGSTDTLPFANMGSGSLAAMAMFE 664
            GTT VGLI  D VIL  D RA+ G +V DK  +K++ +   I    AG+  D +A+  ++ ++ +L++  TGR    +   TLL   L + + +     +++GG D   G  L ++ P  G  +   F   GSGS  A  + E
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLE 148
The following BLAST results are available for this feature:
BLAST of FC920196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSMB_METJA4.745e-1132.17Proteasome subunit beta OS=Methanocaldococcus jann... [more]

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Properties
Property NameValue
Genbank descriptionC32005C04EF RVDevelop1 Citrus clementina cDNA clone C32005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920196 ID=FC920196; Name=FC920196; organism=Citrus clementina; type=EST; length=686bp
CTTGCCGGGGATCCTTTCTTTCGTTTTAAGTTTCTAAGACTCGAAGTCGC
TCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAGTG
GGATCAATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATAGA
TGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGATA
TGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGACG
ACCATTGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGATAC
CAGAGCAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAATTC
ATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTGAC
ACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGTTA
TCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAAGA
AGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTGGT
GGAGTTGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGTTC
AACTGACACTTTACCATTTGCGAACATGGGTTCTGGTTCTCTTGCTGCCA
TGGCTATGTTTGAAATCAAATANCAAGAAGGCCTGA
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