FC920380

Overview
NameFC920380
Unique NameFC920380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2223 contig Ccv1_Contig2223:1278..1968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: INVS_CHICK (Inversin OS=Gallus gallus GN=INVS PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR--GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            RT LH AA  GH ++V +LL  ++   + +  D +G  P+H AA       VE+ L   +  +  +  GRT+  +AA KG   ++  ++       IN  DK   TALH  A +G+ +  +LL+E  A+VDA
Sbjct:  256 RTPLHWAALLGHAQIVHLLLERNKFGTIPS--DSQGATPLHYAAQSNFAETVEVFLKHPSVKDDSDLEGRTSFMWAAGKGSDNVIRTMLDLKLDIDINMTDKYAGTALHAAALSGHVSTVKLLLERNAQVDA 385          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ASB7_PONAB (Ankyrin repeat and SOCS box protein 7 OS=Pongo abelii GN=ASB7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 47/134 (35.07%), Postives = 64/134 (47.76%), Query Frame = 2
Query:  296 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLIS---RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            + + +  A + G    V  +L   E     N  D  GW  +H +A+ G    V + L  GAD  +K+  GG TALHYAA  G  +I  L++    R   IN+K   G T LH  A  G  +   LL+E  AEVD
Sbjct:   14 EESQIQAAVAAGDVHTVRKML---EQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGFTALHYAAMHGRARIARLMLESEYRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVD 144          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANR54_HUMAN (Ankyrin repeat domain-containing protein 54 OS=Homo sapiens GN=ANKRD54 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  416 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            +  +A+  +V  V+ LL  GAD    +D GRTALH+A+  G  +IV+LL+  GA  N +D +G T LH  A T +  +   L+  GA VDA
Sbjct:  114 LRDSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHVPVITTLLRGGARVDA 204          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANR29_HUMAN (Ankyrin repeat domain-containing protein 29 OS=Homo sapiens GN=ANKRD29 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 41/135 (30.37%), Postives = 70/135 (51.85%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            + +   T L  AA  GH +VV  L     S        ++G   + +A+  G++ +VE LL  GA+++ +   G TAL  AA  G+L ++ LL++ GAK+N   + G   L   +  G+S +  +++  GA+ DA
Sbjct:   75 QRESGTTALFFAAQQGHNDVVRFLFGFGASTEFRT---KDGGTALLAASQYGHMQVVETLLKHGANIHDQLYDGATALFLAAQGGYLDVIRLLLASGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDA 206          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANR29_DANRE (Ankyrin repeat domain-containing protein 29 OS=Danio rerio GN=ankrd29 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            T L  A+  GH E+V++L     S        ++G   + +A   G+  +V+ LL  GA+V+ + + G TAL  A+ +G + ++  L+S GAK+N   + G   L   A  G+S + ++L+  GA+ DA
Sbjct:   78 TALFFASQQGHNEIVKLLFEFGASTEFQT---KDGGTALCAACQFGHSRVVDTLLKNGANVHDQLNDGATALFLASQEGHVNLIRQLLSSGAKVNQPREDGTAPLWMAAQMGHSEVVKVLLLRGADRDA 203          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANKS6_HUMAN (Ankyrin repeat and SAM domain-containing protein 6 OS=Homo sapiens GN=ANKS6 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN-------------SKDK-VGCTALHRGASTGNSALCELLIEEGAE 679
            T L  AA+ GH  +V  LL    S   VN+ +  GW+ +  AA  G+V++  +LL  GADVN +N  G + L  A+  G L +V+LL+  GA ++             S+D+ +  TAL      G+ A+  LL+E GA+
Sbjct:   80 TALQFAAAGGHEPLVRFLLRRGAS---VNSRNHYGWSALMQAARFGHVSVAHLLLDHGADVNAQNRLGASVLTVASRGGHLGVVKLLLEAGAFVDHHHPSGEQLGLGGSRDEPLDITALMAAIQHGHEAVVRLLMEWGAD 216          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANKHM_CAEEL (Ankyrin repeat and KH domain-containing protein R11A8.7 OS=Caenorhabditis elegans GN=R11A8.7 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 43/130 (33.08%), Postives = 77/130 (59.23%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            T L +A + GH ++VE+LL   E AN+ +  D++G++P+  AA+ G+ ++VE+LL   A +  ++D  + TAL  A S G   +VELL++ GA    ++    T L   +S G   +  +L+  G+E+++
Sbjct: 1237 TPLTIACANGHKDIVELLLK--EGANIEHR-DKKGFSPLIIAATAGHSSVVEVLLKNHAAIEAQSDRTKDTALSLACSGGRKDVVELLLAHGANKEHRNVSDYTPLSLASSGGYIEIVNMLLTAGSEINS 1363          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ACBD6_MOUSE (Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  326 CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC 607
            C    +  I  ++   A  VN  DEEG A +H A   G+  +V++LL   A +N +++ G+TALHYAA+  +L IVELL+  GA    +D+ GC
Sbjct:  166 CRENNIDHIAKAIKSKAADVNMTDEEGRALLHWACDRGHKELVKVLLQYEAGINCQDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGC 259          
The following BLAST results are available for this feature:
BLAST of FC920380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
INVS_CHICK8.235e-1133.33Inversin OS=Gallus gallus GN=INVS PE=2 SV=2[more]
ASB7_PONAB8.235e-1135.07Ankyrin repeat and SOCS box protein 7 OS=Pongo abe... [more]
ANR54_HUMAN8.235e-1140.66Ankyrin repeat domain-containing protein 54 OS=Hom... [more]
ANR29_HUMAN8.235e-1130.37Ankyrin repeat domain-containing protein 29 OS=Hom... [more]
ANR29_DANRE8.235e-1131.01Ankyrin repeat domain-containing protein 29 OS=Dan... [more]
ANKS6_HUMAN8.235e-1134.29Ankyrin repeat and SAM domain-containing protein 6... [more]
ANKHM_CAEEL8.235e-1133.08Ankyrin repeat and KH domain-containing protein R1... [more]
ACBD6_MOUSE8.235e-1139.36Acyl-CoA-binding domain-containing protein 6 OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionC32007F01EF RVDevelop1 Citrus clementina cDNA clone C32007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920380 ID=FC920380; Name=FC920380; organism=Citrus clementina; type=EST; length=691bp
GGGGAAGGAGTAAAGTGACGAACCGCGCACCGGGTGAGAACCGGACACAA
CCGAACCGCACCATACCATTGCGCACCGCTTTCGACTTGCAACTAGCTCG
CCGCTGGACCAAATCACACCGTCAAAACTCTAATTCTCGGCAAATTGACA
GTACAATTCCGGTATGGACATGGACATCGATCAAACAATCAAGGACAAAG
ACCTCTTCAAAGCCGCCGAAACTGGAGATTCCTCAACATTCAAATCCCTC
TCAAAACAGCAGCTCTTAAAATCTCTCTCCTTGCGGAACGACGACGACCG
CACCCTCCTCCACGTCGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAA
TATTGTTGAGTGTTGATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAA
GAAGGGTGGGCTCCGATTCATTCTGCGGCTAGCATTGGCAATGTGACAAT
CGTGGAAATGTTGTTAAGCAAAGGAGCTGATGTAAATTTGAAGAATGATG
GTGGGCGAACCGCTCTTCACTATGCTGCCAGCAAGGGATGGTTGAAGATT
GTGGAACTTCTGATCTCACGTGGTGCAAAAATTAACTCCAAGGACAAGGT
TGGTTGCACAGCATTGCACCGGGGAGCTAGTACAGGGAATTCAGCATTGT
GTGAACTCTTAATTGAAGAAGGAGCAGAGGTTGATGCTACT
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