FC920380

Overview
NameFC920380
Unique NameFC920380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2223 contig Ccv1_Contig2223:1278..1968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            R+LLH+AA+CG  E + +LL      N     D  G  P+H AA  G    +  LL   ADVN+ N+ G TA+H+ A  G  +++  L+     ++ +D +G TALH     G+      L++ GA+++
Sbjct:   66 RSLLHIAANCGSVECLVLLLKRGADPNYQ---DISGCTPLHLAARNGQKKCMSKLLEYNADVNICNNEGLTAIHWLAVNGRTELLHDLVQHVTNVDVEDAMGQTALHVACQNGHKTTVLCLLDSGADIN 191          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            R+LLH+AA+CG  E + +LL      N     D  G  P+H AA  G    +  LL   ADVN+ N+ G TA+H+ A  G  +++  L+     ++ +D +G TALH     G+      L++ GA+++
Sbjct:   66 RSLLHIAANCGSVECLVLLLKRGADPNYQ---DISGCTPLHLAARNGQKKCMSKLLEYNADVNICNNEGLTAIHWLAVNGRTELLHDLVQHVTNVDVEDAMGQTALHVACQNGHKTTVLCLLDSGADIN 191          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_PONAB (Cortactin-binding protein 2 OS=Pongo abelii GN=CTTNBP2 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  290 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 664
            +D  + L+ AA  GH + V +LLS +     VNA D+ G+ P+ +AA+ G+   VE+L++  A++N   DGG+T L+ A   G  + V+LL+  G   + K   G T +H    TGN    +LL+
Sbjct:  742 EDGHSALYSAAKNGHTDCVRLLLSAEAQ---VNAADKNGFTPLCAAAAQGHFECVELLIAYDANINHAADGGQTPLYLACKNGNKECVKLLLEAGTNRSVKTTDGWTPVHAAVDTGNVDSLKLLM 863          

HSP 2 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 673
            TLL  AA+ G+  ++ +LL+  E    +N   E+G + ++SAA  G+   V +LLS  A VN  +  G T L  AA++G  + VELLI+  A IN     G T L+     GN    +LL+E G
Sbjct:  712 TLLQQAAAQGNVTLLSMLLN--EEGLDINYSCEDGHSALYSAAKNGHTDCVRLLLSAEAQVNAADKNGFTPLCAAAAQGHFECVELLIAYDANINHAADGGQTPLYLACKNGNKECVKLLLEAG 833          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ILK_RAT (Integrin-linked protein kinase OS=Rattus norvegicus GN=Ilk PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  314 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  GA V
Sbjct:    4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ILK_PONAB (Integrin-linked protein kinase OS=Pongo abelii GN=ILK PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  314 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  GA V
Sbjct:    4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ILK_MOUSE (Integrin-linked protein kinase OS=Mus musculus GN=Ilk PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  314 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  GA V
Sbjct:    4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ILK_HUMAN (Integrin-linked protein kinase OS=Homo sapiens GN=ILK PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  314 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  GA V
Sbjct:    4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ILK_CAVPO (Integrin-linked protein kinase OS=Cavia porcellus GN=ILK PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  314 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  GA V
Sbjct:    4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ILK_BOVIN (Integrin-linked protein kinase OS=Bos taurus GN=ILK PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  314 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  GA V
Sbjct:    4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_RHIFE (Cortactin-binding protein 2 OS=Rhinolophus ferrumequinum GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  290 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 676
            +D  + L+ AA  GH + V +LL+ +     V+A D+ G+ P+ +AA+ G+   VE+L +  AD+N   DGG+T L+ A   G  + ++LL+  G+  + K   G T LH    TGN    +LL+   A
Sbjct:  742 EDGHSALYSAAKNGHTDCVRLLLNAEAQ---VDAADKNGFTPLCAAAAQGHFKCVELLTAYDADINHTADGGQTPLYLACKNGNKECIKLLLEAGSDRSVKTSDGWTPLHAAVDTGNVDSVKLLMYHSA 867          
The following BLAST results are available for this feature:
BLAST of FC920380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
HACE1_XENTR1.357e-1333.33E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropi... [more]
HACE1_XENLA1.357e-1333.33E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevi... [more]
CTTB2_PONAB1.357e-1335.20Cortactin-binding protein 2 OS=Pongo abelii GN=CTT... [more]
ILK_RAT1.773e-1334.96Integrin-linked protein kinase OS=Rattus norvegicu... [more]
ILK_PONAB1.773e-1334.96Integrin-linked protein kinase OS=Pongo abelii GN=... [more]
ILK_MOUSE1.773e-1334.96Integrin-linked protein kinase OS=Mus musculus GN=... [more]
ILK_HUMAN1.773e-1334.96Integrin-linked protein kinase OS=Homo sapiens GN=... [more]
ILK_CAVPO1.773e-1334.96Integrin-linked protein kinase OS=Cavia porcellus ... [more]
ILK_BOVIN1.773e-1334.96Integrin-linked protein kinase OS=Bos taurus GN=IL... [more]
CTTB2_RHIFE1.773e-1334.11Cortactin-binding protein 2 OS=Rhinolophus ferrume... [more]

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Properties
Property NameValue
Genbank descriptionC32007F01EF RVDevelop1 Citrus clementina cDNA clone C32007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920380 ID=FC920380; Name=FC920380; organism=Citrus clementina; type=EST; length=691bp
GGGGAAGGAGTAAAGTGACGAACCGCGCACCGGGTGAGAACCGGACACAA
CCGAACCGCACCATACCATTGCGCACCGCTTTCGACTTGCAACTAGCTCG
CCGCTGGACCAAATCACACCGTCAAAACTCTAATTCTCGGCAAATTGACA
GTACAATTCCGGTATGGACATGGACATCGATCAAACAATCAAGGACAAAG
ACCTCTTCAAAGCCGCCGAAACTGGAGATTCCTCAACATTCAAATCCCTC
TCAAAACAGCAGCTCTTAAAATCTCTCTCCTTGCGGAACGACGACGACCG
CACCCTCCTCCACGTCGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAA
TATTGTTGAGTGTTGATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAA
GAAGGGTGGGCTCCGATTCATTCTGCGGCTAGCATTGGCAATGTGACAAT
CGTGGAAATGTTGTTAAGCAAAGGAGCTGATGTAAATTTGAAGAATGATG
GTGGGCGAACCGCTCTTCACTATGCTGCCAGCAAGGGATGGTTGAAGATT
GTGGAACTTCTGATCTCACGTGGTGCAAAAATTAACTCCAAGGACAAGGT
TGGTTGCACAGCATTGCACCGGGGAGCTAGTACAGGGAATTCAGCATTGT
GTGAACTCTTAATTGAAGAAGGAGCAGAGGTTGATGCTACT
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