FC920380

Overview
NameFC920380
Unique NameFC920380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2223 contig Ccv1_Contig2223:1278..1968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: AND1A_MACFA (Ankyrin repeat and death domain-containing protein 1A (Fragment) OS=Macaca fascicularis GN=ANKDD1A PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            ++ D  TLLH AA  GH  V+  ++   E    ++ VD+ G    H AA  G +  ++ L+  G D ++K+  G TALH AA +G + +++ L+  G  +  ++  G TALH  A   +     LL+  G+ V+A
Sbjct:   82 KSKDGLTLLHCAAQKGHVPVLAFIMEDLEDV-ALDHVDKLGRTAFHRAAEHGQLDALDFLVGSGCDHSVKDKEGNTALHLAAGRGHMAVLQRLVDIGLDLEEQNAEGLTALHAAAGGTHPHCVRLLLRAGSTVNA 215          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: EHMT1_HUMAN (Histone-lysine N-methyltransferase, H3 lysine-9 specific 5 OS=Homo sapiens GN=EHMT1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 43/133 (32.33%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            ++ +  T LH+AA  GH EVV+ LLS  +    VN  D+ GW P+  A    +V +V++LLSKG+D+N++++     LH+AA  G + I E+L++    +++ +  G + LH  A         L +   ++V
Sbjct:  804 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 934          

HSP 2 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  287 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            ++D RT L  AA   H E V+ L+   ++  +V+  D EG   +H AA  G+  +V+ LLS G  DVN ++DGG T + +A     + +V+LL+S+G+ IN +D      LH  A +G   + E+L+    ++ A
Sbjct:  772 SEDQRTPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 903          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_LOXAF (Cortactin-binding protein 2 OS=Loxodonta africana GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 42/125 (33.60%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  290 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 664
            +D  + L+ AA  GH + V +LL+ +     VNA D+ G+ P+ +AA+ G+   VE+L++  A++N   DGG+T L+ A   G  + ++LL+  G   + K + G T +H    TGN    +LL+
Sbjct:  740 EDGHSALYSAAKNGHTDCVRLLLNAEAQ---VNAADKNGFTPLCAAAAQGHDKCVELLIAYRANINHAADGGQTPLYLACKNGNKECIKLLLEAGTDRSVKTRDGWTPVHAAVDTGNVDSLKLLM 861          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANKR2_MOUSE (Ankyrin repeat domain-containing protein 2 OS=Mus musculus GN=Ankrd2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            RT LH A+  GH E++E LL   E+   V+  D      +H A   G++ +V +L S+GAD N+++    T LH A   G ++IVE  +S G  IN+KD+ G +ALH         + +LL+  GA++ A
Sbjct:  181 RTALHRASLEGHMEILEKLL---ENGATVDFQDRLDCTAMHWACRGGHLEVVRLLQSRGADTNVRDKLLSTPLHVAVRTGHVEIVEHFLSLGLDINAKDREGDSALHDAVRLNRYKIIKLLLLHGADMMA 307          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: TANC2_MOUSE (Protein TANC2 OS=Mus musculus GN=Tanc2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            T L  AA  G  +V  +LL   E    V   +  G  P+ S    G+  IV++LL+ GADVN+ +  GRT L  AAS+G L  V+ L+++GA I   DK G TAL      G+ ++   L++ GA  D
Sbjct: 1036 TALTAAAGRGKLDVCRLLL---EQGAAVAQPNRRGAVPLFSTVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVDFLLAQGASIALMDKEGLTALSWACLKGHLSVVRSLVDNGAATD 1160          

HSP 2 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 42/119 (35.29%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  329 GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            GH ++V++LL+       VN  D++G  P+  AAS G++  V+ LL++GA + L +  G TAL +A  KG L +V  L+  GA  +  DK G T L   A  G++ + + L++ GA ++
Sbjct: 1078 GHWQIVDLLLTHGAD---VNMADKQGRTPLMMAASEGHLGTVDFLLAQGASIALMDKEGLTALSWACLKGHLSVVRSLVDNGAATDHADKNGRTPLDLAAFYGDAEVVQFLVDHGAMIE 1193          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: FEM1_CAEEL (Sex-determining protein fem-1 OS=Caenorhabditis elegans GN=fem-1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  308 LHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 676
            L  A++ GH E+V++L+   E AN  VN        P+  A   G++ IV+ LL KGAD ++ N  G T L  A+ +  + IVE L+  G  +N K + G TALH  A +GN  + ++L++ G+
Sbjct:   93 LWAASAAGHIEIVKLLI---EKANADVNQATNTRSTPLRGACYDGHLDIVKYLLEKGADPHIPNRHGHTCLMIASYRNKVGIVEELLKTGIDVNKKTERGNTALHDAAESGNVEVVKILLKHGS 213          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: FANK1_MOUSE (Fibronectin type 3 and ankyrin repeat domains 1 protein OS=Mus musculus GN=Fank1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 41/114 (35.96%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  347 EILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            ++LL + E  +V ++  ++ G+  +  AA  G   +V++L+S G DVNLKN  G+ +L  A   G L +V+ L   GA   ++D  GCTALH  A  G+ ++ + +I++G EVD
Sbjct:  124 DLLLRILEGGHVMIDVPNKFGFTALMVAAQKGYTRLVKILVSNGTDVNLKNGSGKDSLMLACYAGHLDVVKYLRRHGASWEARDLGGCTALHWAADGGHCSVIDWMIKDGCEVD 237          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ASB3_MOUSE (Ankyrin repeat and SOCS box protein 3 OS=Mus musculus GN=Asb3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  293 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            ++ T L +A   G  +V+++LL     ANV  +    GW  +H A+  GN   +++LL +GAD   ++D G T L  AA  G L+ + +LIS GA +N +     T L   A  G++   ELL+  GA+ D
Sbjct:  111 EETTPLFLAVESGRIDVLKLLLQ--HGANVNGSHSMSGWNSLHQASFQGNAETIKLLLKQGADRECQDDFGITPLFVAAQYGKLESMSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGADPD 239          

HSP 2 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  308 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN-SKDKVGCTALHRGASTGNSALCELLIEEGAE 679
            +H AA     E +++L+  D S N + A   EG+  +H A S G+  I ++LL  GAD N       T L  A   G + +++LL+  GA +N S    G  +LH+ +  GN+   +LL+++GA+
Sbjct:   47 IHEAAYHNAVECLQMLIHTDSSENYIKAKTFEGFCALHLAVSQGHWKITQILLEAGADPNETTLEETTPLFLAVESGRIDVLKLLLQHGANVNGSHSMSGWNSLHQASFQGNAETIKLLLKQGAD 171          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: LITD_LATTR (Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 2
Query:  308 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK--NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            +H AAS G  +++  L+S+ +  ++ +  +   W P+H A         + LL K  D+NL    DG  T LH A S G + I++ L+ RG+ I  K   G T+LH  A      +  +LIE GA+++A
Sbjct:  675 IHFAASMGSIKMLRYLISIKDKVSINSVTENNNWTPLHFAIYFKKEDAAKELL-KQDDINLTIVADGNLTVLHLAVSTGQINIIKELLKRGSNIEEKTGEGYTSLHIAAMRKEPEIAVVLIENGADIEA 802          

HSP 2 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE 670
            T LH+AA    PE+  +L+   E+   + A   +   P+HSAA IG  + V  LL KGAD+  K   G TALH A S   +K VE L+++GA +   D      +H+     +  +  L +E+
Sbjct:  776 TSLHIAAMRKEPEIAVVLI---ENGADIEARSADNLTPLHSAAKIGRKSTVLYLLEKGADIGAKTADGSTALHLAVSGRKMKTVETLLNKGANLKEYDNNKYLPIHKAIINDDLDMVRLFLEK 895          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: INVSA_XENLA (Inversin-A OS=Xenopus laevis GN=invs-A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  293 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            + RT    AA  G  EVV  +L +D    V N  D+ G   +H+A+  G +T V +LL     V+  +    TAL  A   G  +++  LI  GAK++  DK G + LH  A  GN+ +C++LIE     DA
Sbjct:  317 EGRTAFMWAAGKGSDEVVRTMLELDPELEV-NRTDKYGGTALHAASLSGQITTVRILLENRVQVDAVDVMKHTALFRACEMGHREVISTLIKGGAKVHLVDKDGRSPLHWAALGGNANVCQILIENNINPDA 447          
The following BLAST results are available for this feature:
BLAST of FC920380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
AND1A_MACFA3.950e-1331.85Ankyrin repeat and death domain-containing protein... [more]
EHMT1_HUMAN5.158e-1332.33Histone-lysine N-methyltransferase, H3 lysine-9 sp... [more]
CTTB2_LOXAF5.158e-1333.60Cortactin-binding protein 2 OS=Loxodonta africana ... [more]
ANKR2_MOUSE5.158e-1336.15Ankyrin repeat domain-containing protein 2 OS=Mus ... [more]
TANC2_MOUSE6.737e-1337.50Protein TANC2 OS=Mus musculus GN=Tanc2 PE=1 SV=1[more]
FEM1_CAEEL6.737e-1336.29Sex-determining protein fem-1 OS=Caenorhabditis el... [more]
FANK1_MOUSE6.737e-1335.96Fibronectin type 3 and ankyrin repeat domains 1 pr... [more]
ASB3_MOUSE6.737e-1334.35Ankyrin repeat and SOCS box protein 3 OS=Mus muscu... [more]
LITD_LATTR8.799e-1332.56Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredec... [more]
INVSA_XENLA8.799e-1334.85Inversin-A OS=Xenopus laevis GN=invs-A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32007F01EF RVDevelop1 Citrus clementina cDNA clone C32007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920380 ID=FC920380; Name=FC920380; organism=Citrus clementina; type=EST; length=691bp
GGGGAAGGAGTAAAGTGACGAACCGCGCACCGGGTGAGAACCGGACACAA
CCGAACCGCACCATACCATTGCGCACCGCTTTCGACTTGCAACTAGCTCG
CCGCTGGACCAAATCACACCGTCAAAACTCTAATTCTCGGCAAATTGACA
GTACAATTCCGGTATGGACATGGACATCGATCAAACAATCAAGGACAAAG
ACCTCTTCAAAGCCGCCGAAACTGGAGATTCCTCAACATTCAAATCCCTC
TCAAAACAGCAGCTCTTAAAATCTCTCTCCTTGCGGAACGACGACGACCG
CACCCTCCTCCACGTCGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAA
TATTGTTGAGTGTTGATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAA
GAAGGGTGGGCTCCGATTCATTCTGCGGCTAGCATTGGCAATGTGACAAT
CGTGGAAATGTTGTTAAGCAAAGGAGCTGATGTAAATTTGAAGAATGATG
GTGGGCGAACCGCTCTTCACTATGCTGCCAGCAAGGGATGGTTGAAGATT
GTGGAACTTCTGATCTCACGTGGTGCAAAAATTAACTCCAAGGACAAGGT
TGGTTGCACAGCATTGCACCGGGGAGCTAGTACAGGGAATTCAGCATTGT
GTGAACTCTTAATTGAAGAAGGAGCAGAGGTTGATGCTACT
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