FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:131..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   83 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGI I  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   83 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGI I  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 55/152 (36.18%), Postives = 78/152 (51.32%), Query Frame = 2
Query:   95 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            K H+NI  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGI I+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK D
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNMVVFLNKED 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTR (Elongation factor Tu OS=Chlamydia trachomatis GN=tuf PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 59/181 (32.60%), Postives = 91/181 (50.28%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K HINI  IGHVD GK+T T  +   L G                    F+    +D    E+ RGI I+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+   L++ GY
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRALSGD---------------GLADFRDYSSIDNTPEEKARGITINASHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELVELLEEKGY 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTA (Elongation factor Tu OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 59/181 (32.60%), Postives = 91/181 (50.28%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K HINI  IGHVD GK+T T  +   L G                    F+    +D    E+ RGI I+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+   L++ GY
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRALSGD---------------GLADFRDYSSIDNTPEEKARGITINASHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELVELLEEKGY 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CHLFF (Elongation factor Tu OS=Chlamydophila felis (strain Fe/C-56) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 61/181 (33.70%), Postives = 94/181 (51.93%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K HINI  IGHVD GK+T T  +   L              +AE       Y+ + D    E+ RGI I+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+S  L++ GY
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRAL--------------SAEGLANFCDYSSI-DNTPEEKARGITINASHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISQEDAEL-VDLVEMELSELLEEKGY 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CHLCV (Elongation factor Tu OS=Chlamydophila caviae GN=tuf PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 61/181 (33.70%), Postives = 94/181 (51.93%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K HINI  IGHVD GK+T T  +   L              +AE       Y+ + D    E+ RGI I+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+S  L++ GY
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRAL--------------SAEGLANFCDYSSI-DNTPEEKARGITINASHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISQEDAEL-VDLVEMELSELLEEKGY 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU2_CARHZ (Elongation factor Tu 2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 58/152 (38.16%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   95 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            K H+NI  IGHVD GK+T T  +   L            K+     KR  +    +D    ERERGI I+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTVLA-----------KKGLAQQKRYDE----IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SHIDS (Sulfate adenylyltransferase subunit 1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cysN PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLM--DYSEETFTRIRED---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SALAR (Sulfate adenylyltransferase subunit 1 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=cysN PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  D A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMD 171          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DESVV4.529e-1937.27Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH4.529e-1937.27Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_CYAPA4.529e-1936.18Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU_CHLTR4.529e-1932.60Elongation factor Tu OS=Chlamydia trachomatis GN=t... [more]
EFTU_CHLTA4.529e-1932.60Elongation factor Tu OS=Chlamydia trachomatis (str... [more]
EFTU_CHLFF4.529e-1933.70Elongation factor Tu OS=Chlamydophila felis (strai... [more]
EFTU_CHLCV4.529e-1933.70Elongation factor Tu OS=Chlamydophila caviae GN=tu... [more]
EFTU2_CARHZ4.529e-1938.16Elongation factor Tu 2 OS=Carboxydothermus hydroge... [more]
CYSN_SHIDS4.529e-1931.89Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_SALAR4.529e-1933.97Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
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