FC920394

Overview
NameFC920394
Unique NameFC920394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7564 contig Ccv1_Contig7564:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAD 695
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFA+
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 210          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAD 695
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFA+
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 210          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAD 695
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFA+
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 59          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAD 695
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFA+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 208          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3
Query:  519 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAD 695
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFA+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 208          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 3
Query:  498 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAD 695
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFA+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAE 67          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 53/140 (37.86%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  264 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 665
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 65/197 (32.99%), Postives = 90/197 (45.69%), Query Frame = 3
Query:  111 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAD 695
            VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F +
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEE 186          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 59/166 (35.54%), Postives = 80/166 (48.19%), Query Frame = 3
Query:  186 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 665
            GS+SV+  +    PDR  +       PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG
Sbjct:   50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC920394 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 56/150 (37.33%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  252 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAD 695
            + G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F +
Sbjct:   50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEE 187          
The following BLAST results are available for this feature:
BLAST of FC920394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB2F_SOLLC2.405e-2693.22Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.405e-2693.22Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.405e-2693.22Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.405e-2693.22Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.405e-2693.22Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA3.840e-2480.60Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC7.015e-1837.86Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB121_HORVU1.563e-1732.99Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_PETHY2.041e-1735.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC1.323e-1637.33Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32007G05EF RVDevelop1 Citrus clementina cDNA clone C32007G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920394 ID=FC920394; Name=FC920394; organism=Citrus clementina; type=EST; length=695bp
GGACACCAACAGCTTCTCTTGCTTACACAGCTTCTCTTGCTTACACAGCT
TCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTC
CTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGC
TGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCC
ACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACT
ACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGC
TTTGATCCATTGGGTTTGGCTGATGACCCGGAAGCTTTTGCTGAC
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