FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_MICAN (Phosphoglycerate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=pgk PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.549e-56
Identity = 117/186 (62.90%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLN-ITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            KK+V+ L EADL GKRV VRVD NVP+D     I+DD R+RAA+PTI+ L+  GAKVIL SH+GRP G V     L P+  RLSELLG EV M  DCIGE V   ++++  G V LLEN+RFH EEE NDP+FAKKLA+ ADLYVNDAFG+AHRAHASTEGV  +L PSVAG+L+ KEL+YL  A+
Sbjct:    3 KKTVANLTEADLAGKRVLVRVDFNVPMDKATGAISDDTRIRAALPTIEDLIKKGAKVILCSHMGRPDGQVKENLRLTPVAKRLSELLGQEVIMCPDCIGEGVTAAISQMSNGQVALLENLRFHGEEEANDPDFAKKLAANADLYVNDAFGTAHRAHASTEGVTHYLSPSVAGYLIEKELNYLQAAI 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SYNE7 (Phosphoglycerate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=pgk PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.311e-55
Identity = 114/186 (61.29%), Postives = 133/186 (71.51%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +K++++ L  ADL+GKRV VRVD NVPLD N  ITDD R+RAA+PTI+YL   GAKVIL SH GRPKG       L P+  RLSELLG  V    D +G   E  VA    G V+LLENVRFH EEE ND EFAK LASLAD+YVNDAFG+AHRAHAST GV ++L P VAG+L+ KEL YL  A+
Sbjct:    2 SKRTLASLTAADLEGKRVLVRVDFNVPLDGNGKITDDTRIRAALPTIRYLSESGAKVILVSHFGRPKGKPVESMRLTPVAERLSELLGRPVVKTTDAVGAGAEAQVAATSNGQVVLLENVRFHAEEEANDAEFAKALASLADIYVNDAFGAAHRAHASTAGVTEYLSPCVAGYLLEKELQYLQAAI 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PROM4 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=pgk PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.311e-55
Identity = 112/186 (60.22%), Postives = 139/186 (74.73%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            AK+S+S L   +L GKRVFVRVD NVP++   +ITDD R+RAA+PTIK L+  GA+VILS+H GRPKG V     L P+  RLSELLG  V   + CIG + +     +  G V+LLENVRF + EEKNDP+FAK+L+ LA++YVNDAFG+AHRAHASTEGV KFL P+VAG+LM KEL YL GA+
Sbjct:    2 AKRSLSSLSAEELCGKRVFVRVDFNVPVNAEGDITDDTRIRAALPTIKDLIDKGARVILSAHFGRPKGQVNDAMRLTPVAQRLSELLGHTVIKTDSCIGSDAQAKAQSLNNGDVMLLENVRFIQGEEKNDPDFAKELSELAEVYVNDAFGAAHRAHASTEGVTKFLSPNVAGYLMEKELQYLQGAI 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIBL (Phosphoglycerate kinase OS=Acidobacteria bacterium (strain Ellin345) GN=pgk PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.236e-55
Identity = 110/186 (59.14%), Postives = 135/186 (72.58%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELL------GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +K+  L  KRVF+RVD NVPLD+N  +TDD R+R  +PTI+Y + HGAK+IL SHLGRPKG   PK SLKP+  RL  +L      G  V  + DCIG + ++M  ++ +G  LLLENVRFH EEEKNDP FAK+LASL +LYVNDAFGSAHRAHASTEG+  +++ S AG LM KELDYL  A S
Sbjct:    6 IKDLQLSNKRVFMRVDFNVPLDENGRVTDDTRIRETLPTIEYALRHGAKLILCSHLGRPKGKPNPKMSLKPVAERLRVMLDHAISPGQNVGFSPDCIGMQAQEMAKQLEKGQALLLENVRFHAEEEKNDPAFAKELASLCELYVNDAFGSAHRAHASTEGITHYVEKSAAGLLMQKELDYLGKATS 191          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SYNP6 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.982e-55
Identity = 113/186 (60.75%), Postives = 132/186 (70.97%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +K++++ L  ADL+GKRV VRVD NVPLD N  ITDD R+RAA+PTI+YL   GAKVIL SH GRPKG       L P+  RLSELLG  V    D +G   E  VA    G V+LLENVRFH EEE ND EFAK LASLAD+YVNDAFG+AHRAHA T GV ++L P VAG+L+ KEL YL  A+
Sbjct:    2 SKRTLASLTAADLEGKRVLVRVDFNVPLDGNGKITDDTRIRAALPTIRYLSESGAKVILVSHFGRPKGKPVESMRLTPVAERLSELLGRPVVKTTDAVGAGAEAQVAATSNGQVVLLENVRFHAEEEANDAEFAKALASLADIYVNDAFGAAHRAHAPTAGVTEYLSPCVAGYLLEKELQYLQAAI 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACP2 (Phosphoglycerate kinase OS=Bacillus pumilus (strain SAFR-032) GN=pgk PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.110e-54
Identity = 112/186 (60.22%), Postives = 143/186 (76.88%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKSV   K+ D+KGK VF RVD NVP+ D   +TDD R+RAA+PTI+YL G GAKV+L+SHLGRPKG VT +  L P+  RL ELLG EVK A++  G+ V+K ++++ +G VL+LENVRF+  EEKNDPE +K  A LAD+YVNDAFG+AHRAHAST G+A +L P+V+GFLM KEL+ L  A+S
Sbjct:    3 KKSV---KDIDVKGKVVFCRVDFNVPMKDG-KVTDDTRIRAALPTIEYLTGQGAKVLLASHLGRPKGQVTEELRLTPVAKRLQELLGQEVKKADEAYGDNVKKQISDLKDGDVLVLENVRFYPGEEKNDPELSKAFADLADVYVNDAFGAAHRAHASTAGIAAYL-PAVSGFLMQKELEVLGKAIS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_THEP1 (Phosphoglycerate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pgk PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.450e-54
Identity = 111/175 (63.43%), Postives = 136/175 (77.71%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +K+ DLKGKRV +RVD NVP+ D + + DD R+RAA+PTIKY +  GAKVIL SHLGRPKG  +P++SL P+  RLSELLG EVK     +G+EV+K V E+ EG VLLLEN RFH  E KNDPE AK  ASLAD++VNDAFG+AHRAHAS  G+A+F+ PSVAGFLM KE+ +L
Sbjct:    6 IKDVDLKGKRVIMRVDFNVPVKDGV-VQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI-PSVAGFLMEKEIKFL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_AQUAE (Phosphoglycerate kinase OS=Aquifex aeolicus GN=pgk PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.893e-54
Identity = 104/178 (58.43%), Postives = 134/178 (75.28%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L++ D+KGKRV VRVD NVPLD+  NI DD R+RA++PT++YL+   AKVIL SHLGRPK   PKYSL P+  RLS  +  EVK+A DC+GEEV+++V  + EG V+LLEN+RFHKEE + D  FA++LASL ++YV DAFG+ HR HAS   V KFLKP+V GFL+ KE+ Y   A+
Sbjct:    7 LRDVDVKGKRVLVRVDYNVPLDEQGNIVDDTRIRASLPTVEYLLDANAKVILMSHLGRPKNRDPKYSLAPVAKRLSRYINKEVKLAPDCVGEEVKRIVNSMKEGDVVLLENLRFHKEETECDENFARELASLGEVYVADAFGTCHRKHASVYLVPKFLKPAVMGFLLEKEITYFEKAM 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ANADF (Phosphoglycerate kinase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=pgk PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.473e-54
Identity = 106/181 (58.56%), Postives = 139/181 (76.80%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP---KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++  +   DL GKRVF+RVD NVPLD+   +TDD R+RAA+PTIK+ +   AKVIL SHLGRPKG      K+SL+P   RLSELL  +V +A+DCIG+ V+K+V ++ EG VLLLEN+RFH +EEKND  FA++LA+L D++VNDAFG+AHRAHAST G+A F+K   AGFL+ KE++YL
Sbjct:    2 ALKTIDALDLAGKRVFIRVDFNVPLDEQRRVTDDARIRAALPTIKHAIQARAKVILGSHLGRPKGKPDDREKFSLEPAAQRLSELLKQDVILADDCIGDGVKKLVRDLKEGQVLLLENLRFHPQEEKNDEGFARELATLCDVWVNDAFGTAHRAHASTAGMAAFVKEKAAGFLIQKEVEYL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ANADE (Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pgk PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.229e-54
Identity = 106/173 (61.27%), Postives = 137/173 (79.19%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP---KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            DL GKRVF+RVD NVPLD    +TDD R+RAA+PTI++ +   AKVIL+SHLGRPKG      K +L+P   RLSELL  +V +A+DC+G+ V+K+V ++ +G VLLLEN+RFH EEEKND  FA++LASLAD++VNDAFG+AHRAHAST G+AKF+K   AGFL+ KE++YL
Sbjct:   10 DLAGKRVFIRVDFNVPLDPQGKVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPDDRTKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLLLENLRFHPEEEKNDEAFARELASLADVWVNDAFGTAHRAHASTAGMAKFVKEKAAGFLVQKEVEYL 182          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_MICAN1.549e-5662.90Phosphoglycerate kinase OS=Microcystis aeruginosa ... [more]
PGK_SYNE71.311e-5561.29Phosphoglycerate kinase OS=Synechococcus elongatus... [more]
PGK_PROM41.311e-5560.22Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ACIBL2.236e-5559.14Phosphoglycerate kinase OS=Acidobacteria bacterium... [more]
PGK_SYNP64.982e-5560.75Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_BACP21.110e-5460.22Phosphoglycerate kinase OS=Bacillus pumilus (strai... [more]
PGK_THEP11.450e-5463.43Phosphoglycerate kinase OS=Thermotoga petrophila (... [more]
PGK_AQUAE1.893e-5458.43Phosphoglycerate kinase OS=Aquifex aeolicus GN=pgk... [more]
PGK_ANADF2.473e-5458.56Phosphoglycerate kinase OS=Anaeromyxobacter sp. (s... [more]
PGK_ANADE3.229e-5461.27Phosphoglycerate kinase OS=Anaeromyxobacter dehalo... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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