FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIC5 (Phosphoglycerate kinase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=pgk PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.603e-53
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPL-DDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLG------VEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +++ DL  K VF+RVD NVPL +D   ITDD R+R  +PTI+Y + H AK+IL+SHLGRPKG V PKYSL+P+V RL  LL       V V  + DC+G+  +++  ++  G VLLLEN+RFH EEE NDPEFA+KLASL ++YVNDAFGSAHRAHASTEG+  F+K S AG LM KEL+YL
Sbjct:    6 IRDLDLAHKHVFMRVDFNVPLSEDGSEITDDTRIRETLPTIEYALRHKAKLILASHLGRPKGKVNPKYSLRPVVDRLRTLLDHDVTSRVNVAFSPDCVGDVAKELSLQLESGQVLLLENLRFHAEEEANDPEFARKLASLCEIYVNDAFGSAHRAHASTEGITHFVKQSAAGLLMEKELEYL 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACME (Phosphoglycerate kinase OS=Bacillus megaterium GN=pgk PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.093e-53
Identity = 110/180 (61.11%), Postives = 137/180 (76.11%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            LK+ D+KGKRVF RVD NVP+ D   +TD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG V  +  L  +  RL  LLG +V  A++  GEEV+K +  + EG VL+LENVRF+  EEKNDPE AK  A LAD+YVNDAFG+AHRAHASTEG+A+ + P+VAGFLM KELD L  A+S
Sbjct:    6 LKDIDVKGKRVFCRVDFNVPMKDG-KVTDETRIRAAIPTIQYLVEQGAKVILASHLGRPKGEVVEELRLNAVAERLQALLGKDVAKADEAFGEEVKKTIDGMSEGDVLVLENVRFYPGEEKNDPELAKAFAELADVYVNDAFGAAHRAHASTEGIAQHI-PAVAGFLMEKELDVLSKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ANAD2 (Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pgk PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.093e-53
Identity = 104/173 (60.12%), Postives = 137/173 (79.19%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP---KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +L GKRVF+RVD NVPLD    +TDD R+RAA+PTI++ +   AKVIL+SHLGRPKG      K +L+P   RLSELL  +V +A+DC+G+ V+K+V ++ +G VLLLEN+RFH EEEKND  FA++LASLAD++VNDAFG+AHRAHAST G+A+F+K   AGFL+ KE++YL
Sbjct:   10 ELAGKRVFIRVDFNVPLDPQGRVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPEDRQKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLLLENLRFHPEEEKNDEAFARELASLADVWVNDAFGTAHRAHASTAGMARFVKEKAAGFLVQKEVEYL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_MOOTA (Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.734e-53
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            LK+ +L  KRV VRVD NVPL+    +TD+ R+RAA+PTI+YL+ HGA+VIL SHLGRPKG V  +  L P+   L  LLG +V   NDC+G EVE   A +  G VLLLEN+RFH EEEKNDP FA++LASLAD+YVNDAFG+AHRAHASTEGVA +L P+ AGFL+ KE++ L  A++
Sbjct:    6 LKDLELNNKRVLVRVDFNVPLEAG-RVTDNTRIRAALPTIEYLLDHGARVILMSHLGRPKGKVKEELRLDPVARELESLLGRQVHKVNDCVGPEVEAAAAALKPGEVLLLENLRFHPEEEKNDPGFARQLASLADVYVNDAFGAAHRAHASTEGVAHYL-PAAAGFLLQKEIETLGKALA 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACCN (Phosphoglycerate kinase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pgk PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.734e-53
Identity = 112/186 (60.22%), Postives = 143/186 (76.88%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ D   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG V  +  L P+  RL ELLG +VK A++  G  V++MVA + EG +L+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+VAGFLM KEL+ L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKDG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQVVEEMRLTPVAVRLGELLGKDVKKADEAFGPAVQEMVAAMNEGDILVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVAGFLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SYNJB (Phosphoglycerate kinase OS=Synechococcus sp. GN=pgk PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.570e-53
Identity = 111/184 (60.33%), Postives = 131/184 (71.20%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP----------KGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            DL GKRV VR D NVPLD   NITDD R+RAA+PT++ L   GAKVIL+SHLGRP          K      SL P+  RLS+LLG  V  A DCIG E E +V  +  G V LLENVRF+ EEE NDPEFA+KLASLADL+VNDAFGSAHRAHAST GV  +L+P+VAG+L+ +EL +L GA+
Sbjct:   15 DLAGKRVLVRADFNVPLDAQGNITDDTRIRAALPTVQALTQAGAKVILTSHLGRPVKKDKETGAVKVAREGNSLAPVATRLSQLLGQPVAFAPDCIGPEAEAVVNRLENGQVALLENVRFYPEEEDNDPEFARKLASLADLFVNDAFGSAHRAHASTAGVTAYLQPAVAGYLVERELQFLSGAI 198          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACST (Phosphoglycerate kinase OS=Bacillus stearothermophilus GN=pgk PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.663e-53
Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ D++GKRVF RVD NVP++    ITDD R+RAA+PTI+YL+ HGAKVIL+SHLGRPKG V  +  L  +  RL ELL   V   N+ +G+EV+  V  + EG VLLLENVRF+  EEKNDPE AK  A LADLYVNDAFG+AHRAHASTEG+A +L P+VAGFLM KEL+ L  A+S
Sbjct:    6 IRDVDVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PELTS (Phosphoglycerate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=pgk PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.090e-53
Identity = 110/182 (60.44%), Postives = 139/182 (76.37%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            AKK+V   ++ D+KGKRV +RVD NVP++ N  + DD +++ AVPTI YL+G  A+VIL SHLGRPKG V  +Y + P+  RLSELLG  V  A DC+GE     VA++ +G V+LLENVRFH EEEKND +FA++LA LAD++VNDAFG+AHRAHASTEGVA FL P+VAG LM KEL+ L
Sbjct:    2 AKKTV---RDIDVKGKRVLLRVDFNVPME-NGRVADDVKIKEAVPTINYLIGQKARVILVSHLGRPKGRVDERYKMDPVARRLSELLGKTVVKAGDCVGEAARSAVAQMQDGDVVLLENVRFHPEEEKNDEKFARQLAELADVFVNDAFGTAHRAHASTEGVAGFL-PAVAGLLMEKELEIL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GEOSW (Phosphoglycerate kinase OS=Geobacillus sp. (strain WCH70) GN=pgk PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.954e-53
Identity = 108/180 (60.00%), Postives = 139/180 (77.22%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ D+KGKRVF RVD NVP+++   ITDD R+RAA+PTI+YLM  GAKVIL+SHLGRPKG V  +  L  +  RLSELLG  V   ++  G+ V++ ++++ EG VLLLENVRF+  EEKNDPE AK  A LAD+YVNDAFG+AHRAHASTEG+A +L P+VAGFLM KE++ L  A+S
Sbjct:    6 VRDVDVKGKRVFCRVDFNVPMENGA-ITDDTRIRAALPTIRYLMEQGAKVILASHLGRPKGKVVEELRLNAVARRLSELLGKHVTKTDEAYGDAVKEAISKMNEGDVLLLENVRFYPGEEKNDPELAKAFAELADIYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEIEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLPB (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.954e-53
Identity = 101/180 (56.11%), Postives = 136/180 (75.56%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            L +   KG RV +RVD NVPLD++ +IT+D R+  A+P+I  ++  G ++IL SHLGRPKG V P+ SL+P+  RLSELL   V MA DCIG E  +    + +G ++LLEN+RFH EEEKNDPEFA++LAS+ ++YVNDAFG+AHRAHASTEG+  +++PSVAGFL+ KEL YL  A++
Sbjct:    6 LYDISCKGSRVLMRVDFNVPLDEHAHITNDKRIIEALPSIHKIIEDGGRLILMSHLGRPKGKVVPELSLEPVAKRLSELLDTSVVMAGDCIGTEAMQQALALQDGEIMLLENLRFHPEEEKNDPEFARELASMGEIYVNDAFGTAHRAHASTEGICHYVQPSVAGFLIEKELKYLGQALN 185          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ACIC51.603e-5358.79Phosphoglycerate kinase OS=Acidobacterium capsulat... [more]
PGK_BACME2.093e-5361.11Phosphoglycerate kinase OS=Bacillus megaterium GN=... [more]
PGK_ANAD22.093e-5360.12Phosphoglycerate kinase OS=Anaeromyxobacter dehalo... [more]
PGK_MOOTA2.734e-5360.56Phosphoglycerate kinase OS=Moorella thermoacetica ... [more]
PGK_BACCN2.734e-5360.22Phosphoglycerate kinase OS=Bacillus cereus subsp. ... [more]
PGK_SYNJB3.570e-5360.33Phosphoglycerate kinase OS=Synechococcus sp. GN=pg... [more]
PGK_BACST4.663e-5361.11Phosphoglycerate kinase OS=Bacillus stearothermoph... [more]
PGK_PELTS6.090e-5360.44Phosphoglycerate kinase OS=Pelotomaculum thermopro... [more]
PGK_GEOSW7.954e-5360.00Phosphoglycerate kinase OS=Geobacillus sp. (strain... [more]
PGK_CHLPB7.954e-5356.11Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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