FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_EXIS2 (Phosphoglycerate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=pgk PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.039e-52
Identity = 107/186 (57.53%), Postives = 142/186 (76.34%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ D+KGKRVF RVD NVPL+D   ITDD R+RAA+PTIK+L+  GAKVIL+SH+GRPKG   P++SL P+V RLSELLG ++K+  +  G   E+ V+++ EG V++LENVRF+  E KNDPE A+  A LAD++VNDAFG+AHRAHASTEG+A  ++ +VAG L+ KEL  L  A+S
Sbjct:    3 KKSI---RDIDVKGKRVFTRVDFNVPLEDG-KITDDTRIRAALPTIKHLVDGGAKVILASHMGRPKGEKNPEFSLAPVVARLSELLGKDIKLVEEAYGPVAEEAVSKLEEGDVIVLENVRFYPGETKNDPELAEGFAKLADVFVNDAFGAAHRAHASTEGIAHHVETAVAGLLIEKELQVLGKALS 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GEOKA (Phosphoglycerate kinase OS=Geobacillus kaustophilus GN=pgk PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.357e-52
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ +++GKRVF RVD NVP++    ITDD R+RAA+PTI+YL+ HGAKVIL+SHLGRPKG V  +  L  +  RL ELL   V   N+ +G+EV+  V  + EG VLLLENVRF+  EEKNDPE AK  A LADLYVNDAFG+AHRAHASTEG+A +L P+VAGFLM KEL+ L  A+S
Sbjct:    6 IRDVEVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_FERNB (Phosphoglycerate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.357e-52
Identity = 107/175 (61.14%), Postives = 135/175 (77.14%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +++ DLKGKRV +RVD NVP+ D + +TDD R+  A+PTIKY++  GAKVIL +HLGRPKG   PKY++KP   RL++LLG EVK      GEEVEK VAE+ EG VL+LEN RF   EEKND E AKK ASLAD++VNDAFG+AHRAH+S  G+A+++ PSVAGFLM KE+ +L
Sbjct:    6 IRDVDLKGKRVIMRVDFNVPIKDGV-VTDDTRIVEALPTIKYVLEQGAKVILLTHLGRPKGGPDPKYTVKPAAERLAQLLGKEVKFVPALYGEEVEKAVAELKEGEVLMLENTRFDPGEEKNDLELAKKWASLADIHVNDAFGTAHRAHSSNVGIAQYI-PSVAGFLMEKEIKFL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PROA2 (Phosphoglycerate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=pgk PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.772e-52
Identity = 102/180 (56.67%), Postives = 136/180 (75.56%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            L +   KGKR+ +RVD NVPLD N  IT+D R+  A+P+I+ ++  G ++IL SHLGRPKG VTP+ SL P+  RLSELL  +V MAN+CIG E  +    + +G V++LEN+RFH EEEKNDPEFA++LAS+ ++YVNDAFG+AHRAHASTEG+  ++  SVAGFL+ KEL YL  A++
Sbjct:    6 LSDISCKGKRILMRVDFNVPLDLNGTITNDKRIIEALPSIRQVLETGGRLILMSHLGRPKGKVTPELSLAPVARRLSELLDTDVVMANNCIGTEAMQQALALQDGEVMMLENLRFHPEEEKNDPEFARELASMGEIYVNDAFGTAHRAHASTEGICHYVPISVAGFLIEKELRYLGNALA 185          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BREBN (Phosphoglycerate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pgk PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.772e-52
Identity = 108/186 (58.06%), Postives = 138/186 (74.19%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ +L GKRVF RVD NVP+ D + ITDD R+RAAVPTI+++M  GAKVIL+SH GRPKG V  +  L P+   LS LLG +V+   DC G +VE  V  +  G V+LLENVRFH  EEKNDPE AK  A+LADL+VNDAFG+AHRAHAST G+A+++ P+VAG LM KE+ ++ GA+S
Sbjct:    3 KKSI---RDVELAGKRVFCRVDFNVPMQDGV-ITDDTRIRAAVPTIRFMMEAGAKVILASHFGRPKGQVVEEMRLTPVAAHLSSLLGKDVRKLEDCQGADVEAAVERMESGDVILLENVRFHAGEEKNDPELAKSFAALADLFVNDAFGTAHRAHASTAGIAEYI-PAVAGLLMEKEIRFMGGALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACC1 (Phosphoglycerate kinase OS=Bacillus cereus (strain ATCC 10987) GN=pgk PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.772e-52
Identity = 111/186 (59.68%), Postives = 142/186 (76.34%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG V  +  L P+  RL ELLG +VK A++  G  V++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KELD L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQVVEEMRLTPVAARLGELLGKDVKKADEAFGPAVQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELDVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ANOFW (Phosphoglycerate kinase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pgk PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.772e-52
Identity = 109/180 (60.56%), Postives = 137/180 (76.11%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ D+KGKRVF RVD NVP+ + + +TDD R+RAA+PTI+YLM  GAKVIL+SHLGRPKG V  +  L  +  RLSELLG  V   ++  G+ V+  +AE+ EG VLLLENVRF+  EEKNDPE AK  A LAD+YVNDAFG+AHRAHASTEG+A  L P+VAGFLM KE++ L  A+S
Sbjct:    6 VRDIDVKGKRVFCRVDFNVPMQNGV-VTDDTRIRAALPTIQYLMEQGAKVILASHLGRPKGKVVEEMRLNAVAERLSELLGKRVVKTDEAYGDTVKAAIAEMNEGDVLLLENVRFYPGEEKNDPELAKAFAELADVYVNDAFGAAHRAHASTEGIAHHL-PAVAGFLMEKEIEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PELLD (Phosphoglycerate kinase OS=Pelodictyon luteolum (strain DSM 273) GN=pgk PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.947e-52
Identity = 101/175 (57.71%), Postives = 133/175 (76.00%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L +  ++GKRV +RVD NVPLD N  ITDD R+  A+P+I+ ++ +G ++IL SHLGRPKG V P +SL P+  RLSEL+   V MA DCIG EV +    + +G VLLLEN+RFH EEE NDPEF+++LASL ++YVNDAFG+AHRAHASTEG+  F++ +VAG+L+ KEL YL
Sbjct:    6 LSDITIQGKRVLMRVDFNVPLDGNGEITDDKRIVEALPSIRKVLDNGGRLILMSHLGRPKGKVNPDFSLTPVALRLSELIDTPVIMAGDCIGTEVMQQALALQDGEVLLLENLRFHPEEEANDPEFSRELASLGEIYVNDAFGTAHRAHASTEGITHFVQTAVAGYLIEKELMYL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOAB (Phosphoglycerate kinase OS=Clostridium acetobutylicum GN=pgk PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.947e-52
Identity = 108/186 (58.06%), Postives = 133/186 (71.51%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            K +   +++ D+KGKRV VR D NVPL D + ITD+NR+  A+PTIKYL  HG KVIL SHLG+ KG  P  +L P+  RLSELLG EVK A D   +GE  +K VAE+ EG ++LLEN RF  EE KND  F+K LASLAD+YVNDAFG+AHRAH ST GV KF+  +V G+L+ KEL +L  AV
Sbjct:    2 KFNKKTIEDVDVKGKRVLVRCDFNVPLKDGV-ITDENRLNGALPTIKYLSEHGGKVILCSHLGKAKGPDPSKTLAPVAKRLSELLGREVKFAADDTVVGENAKKAVAELKEGEIVLLENTRFRPEEGKNDDAFSKDLASLADVYVNDAFGTAHRAHCSTVGVTKFVDTAVCGYLIQKELKFLGSAV 186          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GEOMG (Phosphoglycerate kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pgk PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.156e-52
Identity = 101/174 (58.05%), Postives = 130/174 (74.71%), Query Frame = 3
Query:  141 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            LKGK+VF+RVD NVPLD++ NIT+D R+RA +PTI + +  GAKVIL+SHLGRPKG   PKYS+ P   RLS LL  EV++A DCIG+EV+KM+  +  G VLLLENVRF++ EEKND +FAK LA+  ++Y+NDAF  +HRAHAS E + KF     AGFLM  E++Y   A+
Sbjct:   12 LKGKKVFIRVDFNVPLDEHQNITEDTRIRAVLPTINFALDAGAKVILASHLGRPKGERKPKYSMAPAAKRLSRLLNKEVQLAPDCIGDEVKKMIDAMKPGEVLLLENVRFYEGEEKNDADFAKALANDCEIYINDAFAVSHRAHASVEAITKFFPVVAAGFLMNNEINYFEKAM 185          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_EXIS21.039e-5257.53Phosphoglycerate kinase OS=Exiguobacterium sibiric... [more]
PGK_GEOKA1.357e-5260.56Phosphoglycerate kinase OS=Geobacillus kaustophilu... [more]
PGK_FERNB1.357e-5261.14Phosphoglycerate kinase OS=Fervidobacterium nodosu... [more]
PGK_PROA21.772e-5256.67Phosphoglycerate kinase OS=Prosthecochloris aestua... [more]
PGK_BREBN1.772e-5258.06Phosphoglycerate kinase OS=Brevibacillus brevis (s... [more]
PGK_BACC11.772e-5259.68Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_ANOFW1.772e-5260.56Phosphoglycerate kinase OS=Anoxybacillus flavither... [more]
PGK_PELLD3.947e-5257.71Phosphoglycerate kinase OS=Pelodictyon luteolum (s... [more]
PGK_CLOAB3.947e-5258.06Phosphoglycerate kinase OS=Clostridium acetobutyli... [more]
PGK_GEOMG5.156e-5258.05Phosphoglycerate kinase OS=Geobacter metallireduce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
back to top