FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLT3 (Phosphoglycerate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=pgk PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.500e-51
Identity = 107/181 (59.12%), Postives = 133/181 (73.48%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            KK+V    +    GKRV +RVD NVPL D   +TDD R+R A+P+I+ ++  G  VIL SHLGRPKG    + SLKP   RL+ELLG  V+MA DCIG+EV+ M A +  G VL+LEN+RFHKEEE NDPEFAK LASL +++VNDAFG+AHRAHASTEGV  ++  SVAG+L+ KEL YL
Sbjct:    3 KKTVD---DVSFAGKRVLMRVDFNVPLKDGA-VTDDIRIRGALPSIQKVLSDGGCVILMSHLGRPKGKPVAEMSLKPAADRLAELLGKPVQMAPDCIGDEVKNMAAAMKAGDVLMLENLRFHKEEEANDPEFAKSLASLGEVFVNDAFGTAHRAHASTEGVTNYVAESVAGYLIGKELTYL 179          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORHD (Phosphoglycerate kinase OS=Borrelia hermsii (strain DAH) GN=pgk PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.500e-51
Identity = 104/179 (58.10%), Postives = 134/179 (74.86%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            S+  +K+ D  GKR  VR D NVPL +  NITDD R+RAA+PTI+YL   GA+V+L SHLGRPKG    KYSL P+  RLSELLG +VKM  DCIG+EV   V+ +  G V+LLEN+RF+++EE+N  +FAKKL+   D++VNDAFG+AHRAHAST G+A +L P+V GFLM KE ++L
Sbjct:    2 SIKTIKDFDFSGKRALVRCDFNVPLREG-NITDDTRIRAALPTIEYLKSQGARVVLMSHLGRPKGERNLKYSLMPVAKRLSELLGQDVKMLPDCIGDEVATAVSNMKNGDVVLLENIRFYRQEEENCNDFAKKLSQNGDIFVNDAFGTAHRAHASTAGLAAYL-PAVGGFLMEKEDEFL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACWK (Phosphoglycerate kinase OS=Bacillus weihenstephanensis (strain KBAB4) GN=pgk PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.959e-51
Identity = 109/186 (58.60%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KELD L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLIEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELDVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACC2 (Phosphoglycerate kinase OS=Bacillus cereus (strain G9842) GN=pgk PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.959e-51
Identity = 109/186 (58.60%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KELD L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELDVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLPD (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=pgk PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.364e-51
Identity = 98/175 (56.00%), Postives = 133/175 (76.00%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L +  ++GKRV +RVD NVP+D+  NITDD R+  A+P+IK ++  G ++IL SHLGRPKG V  ++SL P+  RLSELL   V MA DCIG EV +    + +G V+LLEN+RFH EEE N+P+FAK+LASL +++VNDAFG+AHRAHASTEG+  ++  +VAG+L+ KEL+YL
Sbjct:    6 LSDVAIQGKRVLMRVDFNVPIDEEKNITDDKRIVEALPSIKKIIDGGGRLILMSHLGRPKGKVNAEFSLAPVAHRLSELLDTPVAMAKDCIGTEVMQAALALQDGEVMLLENLRFHAEEEANNPDFAKELASLGEIFVNDAFGTAHRAHASTEGITHYVPVAVAGYLIEKELNYL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLSY (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/182 (59.34%), Postives = 130/182 (71.43%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELL--GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ D  GKR  VRVD NVPLDD   ITDD R+RAA+PTI+YL+ HGA V+L SHLGRPKG   PKYSL+P+V RL ELL    EVK      G   E  VA +  G VL+LEN RF   EE NDP  A +LA L D++VNDAFG+AHRA+ASTEGVA +L P+VAGFLM KEL Y+ GA++
Sbjct:    6 IRDVDWAGKRALVRVDFNVPLDDQGQITDDTRIRAALPTIRYLLEHGASVVLMSHLGRPKGKPNPKYSLRPVVERLFELLPEAKEVKKTEAITGPAAEAAVAMLKPGQVLVLENTRFDPREEPNDPAMAAELAKLGDVFVNDAFGTAHRANASTEGVAHYL-PAVAGFLMEKELTYIGGALN 186          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLAA (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/182 (59.34%), Postives = 130/182 (71.43%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELL--GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ D  GKR  VRVD NVPLDD   ITDD R+RAA+PTI+YL+ HGA V+L SHLGRPKG   PKYSL+P+V RL ELL    EVK      G   E  VA +  G VL+LEN RF   EE NDP  A +LA L D++VNDAFG+AHRA+ASTEGVA +L P+VAGFLM KEL Y+ GA++
Sbjct:    6 IRDVDWAGKRALVRVDFNVPLDDQGQITDDTRIRAALPTIRYLLEHGASVVLMSHLGRPKGKPNPKYSLRPVVERLFELLPEAKEVKKTEAITGPAAEAAVAMLKPGQVLVLENTRFDPREEPNDPAMAAELAKLGDVFVNDAFGTAHRANASTEGVAHYL-PAVAGFLMEKELTYIGGALN 186          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACHK (Phosphoglycerate kinase OS=Bacillus thuringiensis subsp. konkukian GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/186 (58.06%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KEL+ L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACC3 (Phosphoglycerate kinase OS=Bacillus cereus (strain 03BB102) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/186 (58.06%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KEL+ L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACC0 (Phosphoglycerate kinase OS=Bacillus cereus (strain AH820) GN=pgk PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 108/186 (58.06%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ DLKGKRVF RVD NVP+ +   ITD+ R+RAA+PTI+YL+  GAKVIL+SHLGRPKG    +  L P+  RL ELLG +VK A++  G   ++MVA + EG VL+LENVRF+  EEKND E AK+ A+LAD++VNDAFG+AHRAHAST G+A +L P+V+G LM KEL+ L  A+S
Sbjct:    3 KKSI---RDVDLKGKRVFCRVDFNVPMKEG-KITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQAVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLVLENVRFYAGEEKNDAELAKEFAALADIFVNDAFGAAHRAHASTAGIADYL-PAVSGLLMEKELEVLGKALS 183          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CHLT31.500e-5159.12Phosphoglycerate kinase OS=Chloroherpeton thalassi... [more]
PGK_BORHD1.500e-5158.10Phosphoglycerate kinase OS=Borrelia hermsii (strai... [more]
PGK_BACWK1.959e-5158.60Phosphoglycerate kinase OS=Bacillus weihenstephane... [more]
PGK_BACC21.959e-5158.60Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_CHLPD4.364e-5156.00Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_CHLSY5.700e-5159.34Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]
PGK_CHLAA5.700e-5159.34Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]
PGK_BACHK5.700e-5158.06Phosphoglycerate kinase OS=Bacillus thuringiensis ... [more]
PGK_BACC35.700e-5158.06Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACC05.700e-5158.06Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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