FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.599e-61
Identity = 124/191 (64.92%), Postives = 144/191 (75.39%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT------PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +KK+V+ L  ADL GKRV VRVD NVPLDD   ITDD R+RAA+PTI+ L   GAKVILSSH GRPKG T       K+ L P+  RLSELLG  V   NDCIGEEV+  VA +  G VLLLENVRFH  EE N PEFA++LAS+ADLYVNDAFG+AHRAHASTEGV ++L+PSVAG+L+ KEL YL  A+
Sbjct:    2 SKKTVANLSAADLAGKRVLVRVDFNVPLDDQGKITDDTRIRAALPTIQDLTSKGAKVILSSHFGRPKGETFAERVKDKFRLTPVAARLSELLGKPVPKPNDCIGEEVKAQVAAMQNGDVLLLENVRFHPGEEANTPEFAQELASVADLYVNDAFGTAHRAHASTEGVTRYLRPSVAGYLIEKELQYLQSAI 192          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DICTD (Phosphoglycerate kinase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=pgk PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.727e-61
Identity = 121/181 (66.85%), Postives = 144/181 (79.56%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            AKK++  L++ DLKGKRV VRVD NVPL + + ITDD R+R A+PTIKYLM  GAKVIL SHLGRPKG      L P+  RLSELLG  VK  NDCIGEEVE+ ++ + EG V+LLEN+RF+KEEE NDPEFAKKLASLADLYVNDAFG+AHRAHAST GVA+++ P VAG LM KE++ +
Sbjct:    2 AKKTILDLRDEDLKGKRVLVRVDFNVPLKNGV-ITDDRRIREALPTIKYLMDKGAKVILVSHLGRPKGFQDDLRLDPVAKRLSELLGKPVKKLNDCIGEEVEREISNMKEGDVILLENIRFYKEEEANDPEFAKKLASLADLYVNDAFGTAHRAHASTAGVAQYI-PGVAGLLMKKEIEIM 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CARHZ (Phosphoglycerate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pgk PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 118/186 (63.44%), Postives = 153/186 (82.26%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            KKS+   ++ ++KGK+VFVRVD NVPL++N  ITDD R+RAA+PT++YL   GAK+I++SHLGRPKG    KYSLKP+  RL+ELLG+EVKMA D +G EVEKM  E+  G VLLLENVRF+ EEEKNDPEFA+KLA LA+++V+DAFG+AHRAHAST G+A +L P+VAGFLM KE+++L  A++
Sbjct:    3 KKSI---RDVEVKGKKVFVRVDFNVPLNENREITDDTRIRAALPTLQYLREQGAKLIVASHLGRPKGQFNEKYSLKPVAKRLAELLGIEVKMAPDVVGPEVEKMAGELRPGEVLLLENVRFYPEEEKNDPEFARKLARLAEIFVSDAFGAAHRAHASTAGIASYL-PAVAGFLMEKEINFLSRALN 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.036e-60
Identity = 121/185 (65.41%), Postives = 140/185 (75.68%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +KKS++ L  AD+ GKR  VRVD NVP+DD   ITDD R+RAA+PTI+ L   GAKVIL+SH GRPKGV  K  L P+  RLSELLG EV   +D IG+EV   VA +  G VLLLENVRF+ EEEKND EFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L+ KEL YL  A+
Sbjct:    2 SKKSLASLSSADISGKRALVRVDFNVPVDDQGKITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDDKLRLTPVAKRLSELLGQEVIKTDDSIGDEVAAKVAALQNGQVLLLENVRFYPEEEKNDAEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQNAI 186          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GLOVI (Phosphoglycerate kinase OS=Gloeobacter violaceus GN=pgk PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.036e-60
Identity = 119/181 (65.75%), Postives = 143/181 (79.01%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            AKK+V  L  ADLKGKR  VRVD NVPLD++  ITDD R+RAA+PTI  L G GA+VIL SHLGRPKG   +  L P+  RL ELLG  V  A+D IG EVE+ V ++ +G VLLLENVRF+ EEEKN+PEFA+KLA LA+LYVNDAFG+AHRAHASTEGVA++L+P+VAG L+ KEL+YL
Sbjct:    2 AKKTVEALGAADLKGKRALVRVDFNVPLDESGQITDDTRIRAALPTIGMLTGGGARVILVSHLGRPKGFDDQLRLTPVAKRLGELLGQTVYKADDVIGPEVEEAVKKLEDGDVLLLENVRFYPEEEKNNPEFAQKLAGLAELYVNDAFGTAHRAHASTEGVARYLRPAVAGLLLQKELEYL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_THETN (Phosphoglycerate kinase OS=Thermoanaerobacter tengcongensis GN=pgk PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.015e-60
Identity = 119/175 (68.00%), Postives = 140/175 (80.00%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +++ D+ GKRV VRVD NVP+D+N NITDD R+R A+PTI+YL+ H AKVIL SHLGRPKG   P YSLKP+  RLSELL   V MA D IGE+ +   A + EG VLLLENVRFH EEEKNDPEFAK+LASLAD+YVNDAFG+AHRAHAST GVAK+L P+VAGFL+ KEL  +
Sbjct:    6 VRDIDVSGKRVLVRVDFNVPMDENKNITDDRRIREALPTIEYLINHNAKVILVSHLGRPKGKFNPDYSLKPVAKRLSELLKKPVIMAEDVIGEDAKVKAAALKEGEVLLLENVRFHAEEEKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVAKYL-PAVAGFLIEKELSIM 179          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DICT6 (Phosphoglycerate kinase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=pgk PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.718e-60
Identity = 118/181 (65.19%), Postives = 143/181 (79.01%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            AKK++  L++ +LKGKRV VRVD NVP+ + + ITDD R+R A+PTIKYL+  GAKVIL SHLGRPKG      L P+  RLSELLG  VK  NDCIGEEVEK ++ + EG V+LLEN+RF+KEEE NDPEFAKKLA LADLYVNDAFG+AHRAHAST GVA+++ P VAG LM KE++ +
Sbjct:    2 AKKTILDLQDEELKGKRVLVRVDFNVPIKNGV-ITDDRRIREALPTIKYLIDRGAKVILVSHLGRPKGFQDDLRLDPVAKRLSELLGKPVKKLNDCIGEEVEKEISNMKEGDVVLLENIRFYKEEEANDPEFAKKLAKLADLYVNDAFGTAHRAHASTAGVAQYI-PGVAGLLMKKEIEIM 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SYMTH (Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.553e-59
Identity = 119/184 (64.67%), Postives = 143/184 (77.72%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            ++  +++ D+KGKRVFVRVD NVPL+D   ITDD R+RAAVPTI+YL+  GA  +L+SHLGRPKG    KYSL P   RLSELLG EV  A DCIGEEVE++VAE P G V+LLENVRF+ EEEKNDPEFA KLA L +++VNDAFG+AHRAHAST GVA  +   VAGFLM KE+D +  A+S
Sbjct:    2 ALMTVRDIDVKGKRVFVRVDFNVPLEDG-RITDDTRIRAAVPTIRYLVEEGAVAVLASHLGRPKGQRNEKYSLAPCARRLSELLGREVVFAPDCIGEEVERLVAEQPPGSVVLLENVRFYAEEEKNDPEFAAKLARLGEIFVNDAFGTAHRAHASTRGVADHMPVRVAGFLMQKEVDIMGKALS 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.334e-59
Identity = 121/186 (65.05%), Postives = 139/186 (74.73%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            AK+S++ L  +DL GKRV VRVD NVPL+D   ITDD R+RAA+PTI  L+G GAKVIL++H GRPKG V  K  L P+  RLSELL   V     CIG + E  V  +  G V+LLENVRF  EEEKND +FAK+LA LAD+YVNDAFG+AHRAHASTEGV KFLKPSVAGFLM KEL YL GAV
Sbjct:    2 AKRSLAKLNTSDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLIGKGAKVILAAHFGRPKGQVNDKMRLTPVATRLSELLSKPVTKTESCIGPDAEAKVNAMANGDVVLLENVRFFAEEEKNDADFAKQLAGLADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SYNY3 (Phosphoglycerate kinase OS=Synechocystis sp. (strain PCC 6803) GN=pgk PE=3 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.354e-59
Identity = 121/188 (64.36%), Postives = 141/188 (75.00%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            M +K+S++ L EADL GKRVFVRVD NVPLD N +ITDD R+RAA+PTIK L+  GAKVIL SH GRPKG V     L P+  RL ELLG  V   +DCIG EV   +A +P GGV LLEN+RFH  EE ND EFAK LA+ ADLYVNDAFG+AHRAHASTEGV  FL P+VAG+L+ KEL +L GA+
Sbjct:    1 MLSKQSIANLTEADLAGKRVFVRVDFNVPLD-NGSITDDTRIRAALPTIKDLLSKGAKVILGSHFGRPKGKVVDSMRLTPVGDRLGELLGQPVVKCDDCIGAEVTAKIASLPNGGVALLENLRFHAGEEGNDAEFAKALAANADLYVNDAFGTAHRAHASTEGVTHFLSPNVAGYLIEKELQFLQGAI 187          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CYAP41.599e-6164.92Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_DICTD2.727e-6166.85Phosphoglycerate kinase OS=Dictyoglomus turgidum (... [more]
PGK_CARHZ6.076e-6163.44Phosphoglycerate kinase OS=Carboxydothermus hydrog... [more]
PGK_NOSP71.036e-6065.41Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]
PGK_GLOVI1.036e-6065.75Phosphoglycerate kinase OS=Gloeobacter violaceus G... [more]
PGK_THETN3.015e-6068.00Phosphoglycerate kinase OS=Thermoanaerobacter teng... [more]
PGK_DICT66.718e-6065.19Phosphoglycerate kinase OS=Dictyoglomus thermophil... [more]
PGK_SYMTH2.553e-5964.67Phosphoglycerate kinase OS=Symbiobacterium thermop... [more]
PGK_SYNS33.334e-5965.05Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNY34.354e-5964.36Phosphoglycerate kinase OS=Synechocystis sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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