FC920414

Overview
NameFC920414
Unique NameFC920414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_METVS (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=wecC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 65/202 (32.18%), Postives = 97/202 (48.02%), Query Frame = 3
Query:   69 RKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 671
            +K+ KIC IG GY+G PT +++A      EV  VDIS  R+N   +    I EPGL  ++K     KNL   T  EK    AD   + V TP      G+ K  DL+Y   A   I        ++V +ST+P +T + I  I+       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V
Sbjct:    7 QKIKKICVIGLGYIGLPTASMLANH--GYEVIGVDISEKRVNEIKNGDFKIEEPGLLTLLKGAINSKNLNVKTKAEK----ADAFIICVPTPAIGCDDGS-KKCDLSYVLDAVNSILPYIDEGNLIVIESTIPPETTQKIYDIIDK-----KVYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV 191          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_META3 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=wecC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 60/202 (29.70%), Postives = 98/202 (48.51%), Query Frame = 3
Query:   69 RKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 671
            +++ KIC +G GY+G PT +++A++    +V  VDI   R+      +L I E GL  ++       NL   T+ E    EAD+  + V TP        GK  DL    SA   I    K   +++ +ST+P KT E I   ++ N+ G    +   PE +  G  +++L   DR  IGG      +K+ +  K++YA ++
Sbjct:    9 KEINKICVVGLGYIGLPTASMLAIQ--GYKVIGVDIDEERVKTIRDGKLIINEQGLMTLLTGAITSGNLVVKTEPE----EADVYIICVPTPATAD--KNGKKCDLICVLSAVNNIKPYLKDGDLIIIESTIPPKTTEKIYDDISKNT-GKNIYMAYCPERVLPGNILKELVENDRT-IGG----INKKSAQLAKEIYASFI 196          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: EPSD1_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 59/202 (29.21%), Postives = 96/202 (47.52%), Query Frame = 3
Query:   84 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVY 659
            I  +G GY+G PT  V+A +    EV  VDI+   ++  N  ++ I EP LD +V+    +    +T   +    AD   ++V TP         K  DL+Y E+AAR IA V K   +VV +ST PV   E +   L+     + F          ++   PE +  G  +++L   DR++  G  TP+  +A + L +++
Sbjct:   12 ISVVGLGYIGLPTATVLASR--QREVIGVDINQHAVDTINQGRIHIVEPDLDMLVRAAVSQGYLRATTEPE---PADAFLIAVPTPFLDN-----KQPDLSYIEAAARAIAPVLKRGDLVVLESTSPVGATEQLSDWLSAQRPDLSFPHQQGEESDIRVAHCPERVLPGHVLRELVENDRII--GGMTPKCSEAAQRLYELF 201          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: ALGD_AZOVI (GDP-mannose 6-dehydrogenase OS=Azotobacter vinelandii GN=algD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 59/203 (29.06%), Postives = 95/203 (46.80%), Query Frame = 3
Query:   78 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYA 662
            ++I   G GYVG      ++ +    EV  VDIS ++I+  N  + PI EPGL  ++ +  +   L  +T+V + V   ++  + V TP+K  G       +L Y E   R     + D ++   +VV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G++    L  +YA
Sbjct:    1 MRISIFGLGYVGAVCAGCLSGR--GHEVVGVDISAAKIDMINQGKSPIVEPGLGELLAEGVKTGRLRGTTNVTEAVLATELSMLCVGTPSKLNG-----DLELDYIEEVCRQMGSALRDKTERHTVVVRSTVLPGTVHNVVIPILEEFSGKKAGVDFGVAVNPEFLRESTAIKDYNFPPMTVIGELDKASGRR----LASIYA 192          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_METJA (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanocaldococcus jannaschii GN=wecC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 60/198 (30.30%), Postives = 94/198 (47.47%), Query Frame = 3
Query:   81 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 671
            +IC IG GY+G PT +++A++    +V  VDI+  R+           E  L  +VK      NL   T  EK    AD+  + V TP         K  DLTY   A   I    ++  +++ +ST+P  T + I K L   SK  K  +   PE +  G+ +++L   DRV IGG +    +K+ +  K++Y  +V
Sbjct:   12 RICVIGLGYIGLPTASMLAIQ--GFDVIGVDINEKRVKEIKELSFKTTEKDLMTLVKGAINSGNLKVQTKPEK----ADVFIICVPTPCIE--CDGEKKCDLTYLNKAIESIKPYLENGNLIIIESTIPPGTTDDIYKKL---SKDKKIYVAHCPERVLPGSILKELVENDRV-IGGVD----EKSAEMAKEIYETFV 193          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_SHIFL (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigella flexneri GN=wecC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 60/175 (34.29%), Postives = 83/175 (47.43%), Query Frame = 3
Query:   84 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 605
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F     P+ + E   +   + P+RVL G
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTF-----PQQVGEQADVNIAYCPERVLPG 164          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_ECOLI (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli (strain K12) GN=wecC PE=3 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 60/175 (34.29%), Postives = 83/175 (47.43%), Query Frame = 3
Query:   84 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 605
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F     P+ + E   +   + P+RVL G
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTF-----PQQVGEQADVNIAYCPERVLPG 164          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_ECO57 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli O157:H7 GN=wecC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 60/175 (34.29%), Postives = 83/175 (47.43%), Query Frame = 3
Query:   84 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 605
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F     P+ + E   +   + P+RVL G
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTF-----PQQVGEQADVNIAYCPERVLPG 164          
The following BLAST results are available for this feature:
BLAST of FC920414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
WECC_METVS1.513e-1332.18UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_META32.185e-1229.70UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
EPSD1_RALSO2.854e-1229.21NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]
ALGD_AZOVI4.869e-1229.06GDP-mannose 6-dehydrogenase OS=Azotobacter vinelan... [more]
WECC_METJA3.156e-1130.30UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_SHIFL4.122e-1134.29UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigel... [more]
WECC_ECOLI4.122e-1134.29UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escher... [more]
WECC_ECO574.122e-1134.29UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escher... [more]

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Properties
Property NameValue
Genbank descriptionC32008A11EF RVDevelop1 Citrus clementina cDNA clone C32008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920414 ID=FC920414; Name=FC920414; organism=Citrus clementina; type=EST; length=738bp
GATCGTTGTAGAAACAGTTGTTTTGATTTTGAGAAATCGAAGCTCACTGA
GGTTATATTGATTAGTAAAGGAAAATGGTGAAGATCTGCTGCATCGGTGC
TGGGTATGTTGGGGGGCCGACAATGGCAGTCATTGCACTGAAGTGCCCAT
CCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTCGGATCAATGCCTGG
AACAGTGACCAGCTCCCCATCTATGAGCCTGGACTTGATGGTGTGGTAAA
GCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGATGTTGAGAAGCATG
TCTCTGAGGCTGATATTGTCTTTGTTTCGGTCAATACCCCAACTAAAACT
CAGGGTCTTGGTGCTGGCAAAGCTGCAGATCTGACATACTGGGAGAGCGC
TGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAAAATTGTTGTTGAGA
AATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTGAAAAAATTTTGACC
CACAACAGCAAGGGAATCAAATTCCAGATCCTTTCAAACCCGGAGTTTCT
TGCTGAGGGAACTGCAATACAGGATCTTTTTAACCCAGATCGGGTCCTTA
TCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCGTCAAAGCCTTGAAG
GATGTGTATGCACACTGGGTCCCAGAAGACGAATTTTGACCACAACCTCT
GGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGCTTTC
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