FC920414

Overview
NameFC920414
Unique NameFC920414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: UDG_RICBR (UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 61/178 (34.27%), Postives = 95/178 (53.37%), Query Frame = 3
Query:   78 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY-WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 605
            + I  IG+GYVG   ++ + +      V  +D   ++I+  N   LPIYE  LD    Q    + L F++   + +   + VF++V TP+K  G      ADL+Y +E+  ++   ++K D ++V KSTVP  +   I   L    KG  F + SNPEFL EG A++D   PDR++IG
Sbjct:    1 MNITFIGSGYVG--LVSGVMMSYLGHNVTCLDNDEAKISKLNKRILPIYETKLDKYFTQALEHERLKFTSFYNEELKNTEAVFITVGTPSKASG-----EADLSYVYEAIDKISLHINK-DCLIVIKSTVPPNSCNNIINYL--KEKGFSFNVASNPEFLREGNAVEDFLYPDRIVIG 168          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: UDG_RICPR (UDP-glucose 6-dehydrogenase OS=Rickettsia prowazekii GN=udg PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 63/196 (32.14%), Postives = 95/196 (48.47%), Query Frame = 3
Query:   78 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYA 662
            + I  IG+GYVG   ++ I +      V  +D    +I+  N   LPIYE  LD  +K       L F+          D +F++V TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F + SNPEFL EG+A++D   PDR+++G       +++   L+ +YA
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCLDNDDVKISKLNKKILPIYEAKLDEYLKHALESDRLKFTNIYSNEFRNFDAIFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEALLRKIYA 183          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_METM7 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 66/198 (33.33%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   81 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 671
            KIC IG GY+G PT +++A      EV  VD++  R+N   + +L I EPGL  +VK     KNL   T  E    EAD   + V TP      G+ K  DLTY  SA + I    K   ++V +ST+P +T + I + +       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYEVVGVDVNEKRVNHIKNGELKIEEPGLLTLVKGAINSKNLNVQTSAE----EADAFIICVPTPALENEDGS-KKCDLTYVMSAVQAIIPFLKDGNLIVVESTIPPETTKKIYETINK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV 191          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: ALGD_PSEAE (GDP-mannose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=algD PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 62/202 (30.69%), Postives = 101/202 (50.00%), Query Frame = 3
Query:   78 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVY 659
            ++I   G GYVG      ++ +    EV  VD+S ++I+  N  + PI EPGL+ +++Q R    L  +TD +K V ++D+ F+ V TP+K  G       DL Y E+  R     I + S+   +VV  + +P      +  ++   S    G+ F + +NPEFL E TAI+D   P   +IG  +   G      L+++Y
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGD----LLEEIY 191          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_METMP (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis GN=wecC PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 64/198 (32.32%), Postives = 100/198 (50.51%), Query Frame = 3
Query:   81 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 671
            KIC IG GY+G PT +++A      +V  VD++  R+N   + +L I EPGL  +VK     KNL    +V    +EAD   + V TP   +  G+ K  DL+Y  SA   I    K   ++V +ST+P +T + I + L       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYDVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVRTSATEADAFIICVPTPALAKEDGS-KKCDLSYVMSAVEAILPFVKDGNLIVIESTIPPETTKKIYETLNK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV 191          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: ALGD_PSEPK (GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 3
Query:   78 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQG-LGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG 626
            ++I   G GYVG      +  +    EV  VD+S ++I+  N  + PI EPGL+ +++Q      L  +TD  + +  +D+  + V TP+K  G LG      L Y ES  R    V+ D ++   IVV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  ++  G
Sbjct:    1 MRISIFGLGYVGAVCAGCLTAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGIANGRLRGTTDFAEAIRASDVSMICVGTPSKKNGDLG------LEYIESVCREIGYVLRDTTRRHTIVVRSTVLPGTVKNVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDQPPMTVIGELDSASG 184          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: WECC_METM5 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 63/198 (31.82%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   81 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 671
            KIC IG GY+G PT +++A      EV  VD++  R+N   + +L I EPGL  +VK     KNL    +V+   +EAD   + V TP      G+ K  DLTY   A + I    K   ++V +ST+P +  + I + +       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYEVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVQTSATEADAFIICVPTPALENEDGS-KKCDLTYVMGAVQNIIPFLKEGNLIVIESTIPPEITKKIYETIDK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV 191          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: ALGD_PSESY (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 64/210 (30.48%), Postives = 101/210 (48.10%), Query Frame = 3
Query:   78 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED 680
            ++I   G GYVG      ++ +    EV  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G       +++ A  + +D
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHEVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGDVLQSLYEELDAPIIRKD 202          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: ALGD_PSESM (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato GN=algD PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 63/210 (30.00%), Postives = 101/210 (48.10%), Query Frame = 3
Query:   78 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED 680
            ++I   G GYVG      ++ +    +V  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G       +++ A  + +D
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHDVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGLATGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKNTRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGDVLQSLYEELDAPIIRKD 202          
BLAST of FC920414 vs. ExPASy Swiss-Prot
Match: ALGD_PSESH (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. phaseolicola GN=algD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 63/210 (30.00%), Postives = 101/210 (48.10%), Query Frame = 3
Query:   78 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED 680
            ++I   G GYVG      ++ +    +V  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G       +++ A  + +D
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHDVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGDVLQSLYEELDAPIIRKD 202          
The following BLAST results are available for this feature:
BLAST of FC920414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UDG_RICBR1.013e-1734.27UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (... [more]
UDG_RICPR1.120e-1632.14UDP-glucose 6-dehydrogenase OS=Rickettsia prowazek... [more]
WECC_METM74.255e-1633.33UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_PSEAE1.617e-1530.69GDP-mannose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
WECC_METMP2.112e-1532.32UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_PSEPK6.145e-1531.77GDP-mannose 6-dehydrogenase OS=Pseudomonas putida ... [more]
WECC_METM51.788e-1431.82UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_PSESY3.983e-1430.48GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSESM6.794e-1430.00GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSESH8.873e-1430.00GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]

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Properties
Property NameValue
Genbank descriptionC32008A11EF RVDevelop1 Citrus clementina cDNA clone C32008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920414 ID=FC920414; Name=FC920414; organism=Citrus clementina; type=EST; length=738bp
GATCGTTGTAGAAACAGTTGTTTTGATTTTGAGAAATCGAAGCTCACTGA
GGTTATATTGATTAGTAAAGGAAAATGGTGAAGATCTGCTGCATCGGTGC
TGGGTATGTTGGGGGGCCGACAATGGCAGTCATTGCACTGAAGTGCCCAT
CCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTCGGATCAATGCCTGG
AACAGTGACCAGCTCCCCATCTATGAGCCTGGACTTGATGGTGTGGTAAA
GCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGATGTTGAGAAGCATG
TCTCTGAGGCTGATATTGTCTTTGTTTCGGTCAATACCCCAACTAAAACT
CAGGGTCTTGGTGCTGGCAAAGCTGCAGATCTGACATACTGGGAGAGCGC
TGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAAAATTGTTGTTGAGA
AATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTGAAAAAATTTTGACC
CACAACAGCAAGGGAATCAAATTCCAGATCCTTTCAAACCCGGAGTTTCT
TGCTGAGGGAACTGCAATACAGGATCTTTTTAACCCAGATCGGGTCCTTA
TCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCGTCAAAGCCTTGAAG
GATGTGTATGCACACTGGGTCCCAGAAGACGAATTTTGACCACAACCTCT
GGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGCTTTC
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