FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 83/213 (38.97%), Postives = 130/213 (61.03%), Query Frame = 1
Query:  112 KPVSEPPPSTRSDLTEQWSDEDDLYS--------------RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSV---PLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            KP  EPP  TR+   ++ +      S              RL  +QR  + + ++EEYV+++++ LK +  R QEE  R+  +   P+ +G   E++D ++ IV ST G  YYV I+S +++++L+P  SV LH  + ++V +L  + D  I+++   + P  +Y DIGG + Q QEI+EAVELPLTH ELY+++GI PP+GV+LYG PGTGK
Sbjct:   28 KPKYEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGK 238          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34
Identity = 70/173 (40.46%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +L  L+R  +++ +++E+++++++ LK +  + +EE   V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++ L+P  SV L+   +A+V VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK
Sbjct:   60 KLLKLERIKDYLMMEDEFIRNQER-LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 231          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 71/175 (40.57%), Postives = 118/175 (67.43%), Query Frame = 1
Query:  190 RLKSL--QRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            RLK L  +R  +++ +++E+++++++ LK +  R +EE   V  ++  P+ +G   E++D  + IV +  GS +YV I+S +++E L+P  SV L+  ++A++ VL  + D  +S++   + P  TY D+GG D Q QEI+EAVELPLTH E Y+++GI PP+GV+LYG PGTGK
Sbjct:   62 RLKLLKSERIKDYLLMEQEFIQNQER-LKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGK 235          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 70/172 (40.70%), Postives = 112/172 (65.12%), Query Frame = 1
Query:  190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            RL  L+R  +++ ++EE+V  +++    E    ++  +V  ++  P+ +G   E++D+++ IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + P  +Y DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGK
Sbjct:   69 RLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGK 240          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.916e-33
Identity = 69/168 (41.07%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  196 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            ++L  ++  ++  +  +++E+  L RE+   + E++R ++ PLVI    E++D +   V STTG ++ +     I+R+ L+P A VAL++ + ++VDVLP E D  ++ +   EKPDV+Y  IGG + Q +E++E VELPL   EL+++IGI+PP+GVLLYGPPGTGK
Sbjct:   31 RNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGK 198          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 74/192 (38.54%), Postives = 118/192 (61.46%), Query Frame = 1
Query:  127 PPPSTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P P    DL     +   +L  R   L+ QL  I+  + Y++ ++   +RE+ + + E+++++S PLVIG   +++D+N  IV S+ G  + V I  ++N E +KP A   L++ S A+V++LP   D+ I  +   E P   Y +IGG + Q  EIREAVELPL   E+++++GI+PP+GVLL+GPPGTGK
Sbjct:    9 PEPQKGEDLYRYLLERVTNLEDRNTELREQLRQIEADKRYLETQKVRYEREVRKFKGEIEQMKSPPLVIGTVTDLIDENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGK 200          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 73/187 (39.04%), Postives = 114/187 (60.96%), Query Frame = 1
Query:  142 RSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            + DL  Q  +    L SR   L+ Q+   +  + Y++ ++   +RE+ + + E ++++S PL+IG  +++VD N  IV S+ G  + VR   ++N + +KP A   L++ S A+V++LP   D+ +  +   + P   Y DIGG   Q  E+REAVELPL   EL+ QIGI+PP+GVLLYGPPGTGK
Sbjct:   39 KQDLESQMLERISSLESRNLELREQIRQAEADKRYIETQKIRYEREVRKLKSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGK 225          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 64/171 (37.43%), Postives = 109/171 (63.74%), Query Frame = 1
Query:  187 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            S+ + L+ Q+  ++  + Y++ ++   +RE+ + + E++ +++ PL++G   +++D    +V S+ G  + VR+   +N   LK      L++ S A+V+VLP   DS +  +   + P  TY DIGG + Q  EIREAVELP+T  +L+++IGI+PP+GVLLYGPPGTGK
Sbjct:   30 SQNQELKEQIRQLESDKRYIETQKIRYEREVRKLKSEIEHLKTPPLIVGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGK 200          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 65/166 (39.16%), Postives = 114/166 (68.67%), Query Frame = 1
Query:  211 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGK
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGK 181          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 65/166 (39.16%), Postives = 114/166 (68.67%), Query Frame = 1
Query:  211 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGK
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGK 181          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS4_SCHPO1.443e-3438.9726S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS4_DROME1.884e-3440.4626S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_CAEEL2.083e-3340.57Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_ORYSJ4.641e-3340.7026S protease regulatory subunit 4 homolog OS=Oryza... [more]
PSMR_METTH7.916e-3341.07Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METPE1.034e-3238.54Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_METB61.034e-3239.04Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METHJ5.131e-3237.43Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_SULIY1.493e-3139.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.493e-3139.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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