FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 65/166 (39.16%), Postives = 114/166 (68.67%), Query Frame = 1 
Query:  211 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGK
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGK 181
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 65/166 (39.16%), Postives = 114/166 (68.67%), Query Frame = 1 
Query:  211 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGK
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGK 181
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 65/166 (39.16%), Postives = 114/166 (68.67%), Query Frame = 1 
Query:  211 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGK
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGK 181
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 65/166 (39.16%), Postives = 114/166 (68.67%), Query Frame = 1 
Query:  211 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGK
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGK 181
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 65/166 (39.16%), Postives = 115/166 (69.28%), Query Frame = 1 
Query:  211 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V I S I+++L+KP  SVAL++  + +++VLP + D  +  +   E+P+VTY++IGG + Q +E+RE VELPL + E++++IG++PP+GVLLYGPPGTGK
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGK 181
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 71/190 (37.37%), Postives = 117/190 (61.58%), Query Frame = 1 
Query:  133 PSTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P    + TE   D    L SR   L+ Q   I+ ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +  IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +   E  +V Y+ IGG D Q QE++EAVELPLT  E + +IGI+PP+GVLLYG PGTGK
Sbjct:   17 PGELGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGK 206
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 64/171 (37.43%), Postives = 109/171 (63.74%), Query Frame = 1 
Query:  187 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +R+  L+ ++  ++++++ ++ E   L +E    + E+ R++  PL++G  ++ V +   +V S+TG ++ V +   +N + L P   V L++ +  +VDVLP   D     +   E+P+V Y DIGG + Q QEIRE VELPL H EL++++GI+PP+G+LLYGPPGTGK
Sbjct:   47 ARIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGK 217
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 64/171 (37.43%), Postives = 113/171 (66.08%), Query Frame = 1 
Query:  202 LQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE-----VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L+R  +++ +++E++++   N  +    ++E+     ++ ++  PL +G   E++D N+ IV ST G  +YVRI+S +++  L   A+V L+  + ++V V+  E D  ++++   + P  +Y+DIGG + Q QE++EA+ELPLTH ELY++IGI PP+GV+LYG PGTGK
Sbjct:   61 LERIKDYLLMEQEFLQNYDLNQPKVDENSKEQADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGK 231
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 70/190 (36.84%), Postives = 116/190 (61.05%), Query Frame = 1 
Query:  133 PSTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P    + TE   D    L SR   L+ Q   I+ ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +  IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +   E  +V Y+ IGG D Q QE++EAVELPL   E + +IGI+PP+GVLLYG PGTGK
Sbjct:   17 PGELGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGK 206
[Close]
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 61/171 (35.67%), Postives = 112/171 (65.50%), Query Frame = 1 
Query:  187 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++  L+ ++  ++++ + +  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D     +   EKPD+++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGK
Sbjct:   25 TQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGK 195
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PSMR_SULIM1.493e-3139.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.493e-3139.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK1.493e-3139.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA1.493e-3139.16Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULSO1.950e-3139.16Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_METMA1.950e-3137.37Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METJA4.344e-3137.43Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS4_DICDI7.409e-3137.4326S protease regulatory subunit 4 homolog OS=Dicty... [more]
PSMR_METAC1.264e-3036.84Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METMP4.803e-3035.67Proteasome-activating nucleotidase OS=Methanococcu... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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