FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 62/179 (34.64%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  172 EDDLYSRLKSLQRQL-EFIDIQEEY--VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            ED+    L S +R+L E  DI+++   ++ ++  + ++  +++ ++K +QSV  ++G+ ++ + +   IV +T G  Y V    +IN+E LK    V+L   +  ++  LP E D  +  +S  +  +++Y+D+GG   Q +E+RE VELPL + EL+K++GI PP+G LL+GPPGTGK
Sbjct:   19 EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGK 197          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1
Query:  118 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++P      D  ++  +  ++  RLK L+ QL              K L ++  +++ ++K +QSV  ++G+ ++ + +   IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGK
Sbjct:    1 MADPRDKALQDYRKKLLEHKEIDGRLKELREQL--------------KELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGK 180          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1
Query:  118 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++P      D  ++  +  ++  RLK L+ QL              K L ++  +++ ++K +QSV  ++G+ ++ + +   IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGK
Sbjct:    1 MADPRDKALQDYRKKLLEHKEIDGRLKELREQL--------------KELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGK 180          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1
Query:  118 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++P      D  ++  +  ++  RLK L+ QL              K L ++  +++ ++K +QSV  ++G+ ++ + +   IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGK
Sbjct:    1 MADPRDKALQDYRKKLLEHKEIDGRLKELREQL--------------KELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGK 180          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1
Query:  118 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++P      D  ++  +  ++  RLK L+ QL              K L ++  +++ ++K +QSV  ++G+ ++ + +   IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGK
Sbjct:    1 MADPRDKALQDYRKKLLEHKEIDGRLKELREQL--------------KELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGK 180          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 63/216 (29.17%), Postives = 112/216 (51.85%), Query Frame = 1
Query:  115 PVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---------------------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P+ E   S   D     S ED +    + L+ ++  +    +    E  + K ++   QE++K  + +P ++G  +E+++ N                       ++ ++T    ++ ++  ++ + LKP   V +++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGK
Sbjct:    4 PMVEDTSSFEEDQLASMSTED-IVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGK 218          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 59/196 (30.10%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD------------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            DD+    + L  ++  +  + +    + +++K ++   QE++K  + +P ++G  +E+++                  Q  G   ++ ++T    ++ ++  ++ + LKP   V +++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH E ++++GI PP+GVLLYGPPGTGK
Sbjct:   22 DDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGK 217          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 63/216 (29.17%), Postives = 111/216 (51.39%), Query Frame = 1
Query:  115 PVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---------------------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P+ E   S   D     S ED +    + L  ++  +    +    E  + K ++   QE++K  + +P ++G  +E+++ N                       ++ ++T    ++ ++  ++ + LKP   V +++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGK
Sbjct:    4 PMVEDTSSFEEDQLASMSTED-ITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGK 218          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 61/229 (26.64%), Postives = 116/229 (50.66%), Query Frame = 1
Query:  115 PVSEPPPSTRSDLTEQWSDED--------------DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P  E P + +  +   W + +              ++  R + L  +++ +  +   V  E + +K ++    E++K  +++P ++   +E++D                 Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK
Sbjct:    5 PTPESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 57/195 (29.23%), Postives = 108/195 (55.38%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++  R + L  +++ +  +   V  E + +K ++    E++K  +++P ++   +E++D                 Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK
Sbjct:   39 EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS10_CAEEL6.491e-2734.64Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_SPETR1.107e-2632.4726S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE1.107e-2632.4726S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN1.107e-2632.4726S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN1.107e-2632.4726S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS6A_BRACM2.088e-2529.1726S protease regulatory subunit 6A homolog OS=Bras... [more]
PS6AB_ARATH3.562e-2530.1026S protease regulatory subunit 6A homolog B OS=Ar... [more]
PS6AA_ARATH4.652e-2529.1726S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_RAT1.036e-2426.6426S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN1.353e-2429.2326S protease regulatory subunit 6A OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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