FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 57/196 (29.08%), Postives = 106/196 (54.08%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---------------------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +D+    + L  ++  I  + +    E  + K ++   QE++K  + +P ++G  +E+++ N                       ++ ++T    ++ ++  ++ + LKP   V +++ S  ++D LP E DS +  +   EKP   Y+DIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGK
Sbjct:   22 EDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGK 217          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 60/229 (26.20%), Postives = 116/229 (50.66%), Query Frame = 1
Query:  115 PVSEPPPSTRSDLTEQWSDED--------------DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P  E P + +  +   W + +              ++  R + L  +++ +  +   V  E + +K ++    E++K  +++P ++   +E++D                 Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP + DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK
Sbjct:    8 PTPESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 236          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 56/195 (28.72%), Postives = 108/195 (55.38%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++  R + L  +++ +  +   V  E + ++ ++    E++K  +++P ++   +E++D                 Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK
Sbjct:    4 EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 198          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 56/195 (28.72%), Postives = 108/195 (55.38%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++  R + L  +++ +  +   V  E + ++ ++    E++K  +++P ++   +E++D                 Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK
Sbjct:   23 EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 217          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 53/158 (33.54%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  226 DIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D Q +  +   ++L++   + + ++K +QS+  +IG+ M+ + +   IV +++G  Y V + ++++R  LK    V L   +  ++ +LP E D  +  ++  E+ ++T++ IGG   Q +E+RE +ELPL + E+++++GI PP+GVLLYGPPGTGK
Sbjct:   71 DDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGK 228          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 56/158 (35.44%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  235 EEYVKDEQKNL---KRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            E  V+  ++NL   K+E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S +++E L     V L   +  ++  LP E D  +  +   +  +++Y+ +GG   Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGK
Sbjct:   29 ESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 186          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 56/158 (35.44%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  235 EEYVKDEQKNL---KRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            E  V+  ++NL   K+E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S +++E L     V L   +  ++  LP E D  +  +   +  +++Y+ +GG   Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGK
Sbjct:   29 ESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 186          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 61/169 (36.09%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  193 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +  LQRQL         ++ ++  L   +   +EE++ +Q     +G+ ++++ +N  +V       Y V I  +I+   + PS  VAL   S  L  VLP + D  ++L+   + PD TY+ IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   40 IHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 208          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 56/178 (31.46%), Postives = 105/178 (58.99%), Query Frame = 1
Query:  166 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            S+ D    + KS   Q    D + + ++   ++L ++  + ++++K +QSV  +IG+ ++ +D    IV +++G  Y V   + +++  L     V+L   +  ++ +LP E D  +  +S  +  D+++  +GG + Q +E+RE +ELPL + EL+ ++GI PP+GVLLYGPPGTGK
Sbjct:    2 SERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGK 179          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 1
Query:  193 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L+ LQR+  +   + E  ++E  +  R L   +EE++ +Q     +G+ ++++ +N  +V       Y V I  +I+   L PS  VAL   S  L  VLP + D  ++L+   + PD TY+ IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   43 LQRLQREKSYNLNRLEAQRNELNSRVRML---REELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 208          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS6A_SOLLC2.309e-2429.0826S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_MOUSE2.309e-2426.2026S protease regulatory subunit 6A OS=Mus musculus... [more]
PR6AB_XENLA3.015e-2428.7226S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PR6AA_XENLA3.015e-2428.7226S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS10_YEAST5.143e-2433.5426S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PS10B_ARATH1.496e-2335.4426S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH1.496e-2335.4426S protease regulatory subunit 10B homolog A OS=A... [more]
PRS8A_ARATH1.496e-2336.0926S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS10_SCHPO1.496e-2331.46Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS8B_ARATH4.354e-2337.8726S protease regulatory subunit 8 homolog B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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