FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 56/184 (30.43%), Postives = 102/184 (55.43%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ---------NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D++  + K L+ + + +  +      E  ++++ +    ++++    +P ++   +E++D             +V ++T    ++     ++ + L+P   V +++ S  ++D LPPE DS +  +   EKP   Y+DIGG D Q QE+ EAV LP+TH E ++ IGI PP+GVL+YGPPGTGK
Sbjct:   32 DEVNRKAKLLENETKVLRSEHISKHLEMDSIQKRIKENNDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVVVKASTRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGK 215          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 56/146 (38.36%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  262 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            N +  LLR  EE++ +Q     +G+ ++ + +N  +V       Y V I   I+ + +KP+  VAL   S  L+ +LP + D  +SL+   + PD TY  +GG + Q +EI+E +ELP+ H EL++ +GI  P+G+LLYGPPGTGK
Sbjct:   49 NARVRLLR--EEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGK 192          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  244 VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            ++ ++  L R +   +EE+  +Q     +G  +E + +   +V +     Y V++   +N + LK    VAL   S  +  +LP + D  +SL+   + PD TY  IGG D Q +EIRE +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   92 LEQKRAELNRRVRFLREEISIVQEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGK 243          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 60/171 (35.09%), Postives = 99/171 (57.89%), Query Frame = 1
Query:  223 IDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            I  +E  ++D+ +NL+R  L+AQ            EE++++Q     +G+ ++++ +   ++  +    Y V I  +I  + L P   VAL   S AL  +LP + D  +SL+   + PD TY  +GG D Q +EI+E +ELP+ H EL++ +GI  P+GV++YGPPGTGK
Sbjct:   35 IQEKEIVLRDKIENLRR--LQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKVMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGK 203          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 57/148 (38.51%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  259 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR-ELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            K LK++  + ++ +K IQ +  +IG+ +  +D+   IV +  G  Y VR  +  ++  LL P A V L   +  ++ +LP E D  I  ++      V+Y +IGG   Q +E+RE VELPL   EL+ ++GI  P+GVLLYGPPGTGK
Sbjct:   37 KKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGK 184          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 68/196 (34.69%), Postives = 106/196 (54.08%), Query Frame = 1
Query:  139 TRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEY------VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINREL---LKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            T  D+   + D      +L++L+ QL  ++ + E          E    +++L R   E K+++  PL I    E+ D+  G V    G+N     L+ +  EL   L+P + VA++ +S ++V  L  EAD    ++   + PDV Y DIGG D Q +E+RE VELP+    L++ +GI+PP GVLL+GPPGTGK
Sbjct:    6 TVEDVELPYDDSASQQDKLEALEEQLSTLEEENEERDRLLDANAENNKYQQKLERLSHENKKLKQSPLFIATVQELTDE--GAVIKQHGNNQ--EALTEVTDELRATLEPGSRVAVN-NSLSVVRQLDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGK 196          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  205 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  205 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  205 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  205 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGK
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS6A_DICDI5.686e-2330.4326S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS8_SCHPO9.699e-2338.3626S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8_ENCCU9.699e-2336.8426S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS8_NAEFO1.654e-2235.0926S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS10_DICDI1.654e-2238.5126S protease regulatory subunit S10B OS=Dictyostel... [more]
PSMR2_HALSA4.814e-2234.69Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS8_RAT1.401e-2135.5926S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.401e-2135.5926S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.401e-2135.5926S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN1.401e-2135.5926S protease regulatory subunit 8 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
back to top