FC920497

Overview
NameFC920497
Unique NameFC920497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5819 contig Ccv1_Contig5819:118..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVX_BACSU (Acetolactate synthase OS=Bacillus subtilis GN=alsS PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 51/209 (24.40%), Postives = 93/209 (44.50%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            G  L    L   G TH+FG+ G  + ++ +     G   I   +EQ           LTGKPG++L  SGPG  +   GL        P+V ++G+  + D  +   Q LD     +P +K++V+ +D+  +P+ V      A +G+ G  ++  P DV+++  +              +     G   +  I  A++ ++ AK P+++
Sbjct:   16 GAELVVDCLVEQGVTHVFGIPGAKIDAVFDALQDKGPEIIVARHEQNAAFMAQAVGRLTGKPGVVLVTSGPGASNLATGLLTANTEGDPVVALAGNVIRADRLKRTHQSLDNAALFQPITKYSVEVQDVKNIPEAVTNAFRIASAGQAGAAFVSFPQDVVNEVTNT--------KNVRAVAAPKLGPAADDAISAAIAKIQTAKLPVVL 216          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 61/211 (28.91%), Postives = 95/211 (45.02%), Query Frame = 3
Query:   69 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            + G  +  +SL   G  H+FG  G  V  + + L    GV  I   +EQ            TGK G++L  SGPG  + + G++   +++ P+V+ISG       G   FQE D +   +P  K +   K   ++P    +    A +GRPG   +DLP D+L +T +                  T+G      I KA+ +L +AKKP+I
Sbjct:    4 LSGAEMVIRSLINQGIQHIFGYPGGAVLDIYDALKTVGGVEHILVRHEQAATHMADGYARSTGKIGVVLVTSGPGATNAITGIATAYMDSIPMVVISGQVASSLIGYDAFQECDMIGISRPIVKHSFLVKRTEDIPIIFKKAFWLASTGRPGPVVIDLPKDILKKT-NKYNFIWPKNIHIRSYNPTTKGH--QGQIKKALRILLKAKKPII 211          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_SCHPO (Acetolactate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 57/197 (28.93%), Postives = 93/197 (47.21%), Query Frame = 3
Query:  120 HMFGVVGIPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS--VXXXXXXXXXXXXXIETVTQGG-IVNSDIDKAVSLLKEAKKPLI 698
            H+FG  G  +  + +   +     FI   +EQ           +T KPG++L  SGPG  + +  +++ + +  P+V+ SG       G   FQE D V   +  +K+ V  KD+ ++P+ + +  E A SGRPG   +DLP DV    +   +              E + +G   V + ID+  +LLK AKKP+I
Sbjct:  104 HVFGYPGGAILPVFDAIYRSPHFEFILPRHEQAAGHAAQAYSRVTKKPGVVLVTSGPGATNVITPIADALADGTPLVVFSGQVATSAIGSDAFQEADMVGISRSCTKWNVMVKDVADLPRRIDEAFEIATSGRPGPVLVDLPKDVTASVLKEPIPILSSVPSMNRRMKEVLEEGSKNVTAKIDRVANLLKLAKKPVI 300          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVI_BUCSC (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=ilvI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 58/211 (27.49%), Postives = 98/211 (46.45%), Query Frame = 3
Query:   69 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            + G+ +  +SL   G  ++FG  G  V  + + L     ++ I   +EQ            TGK G++L  SGPG  + + G++   +++ PIV+ISG       G   FQE D +   +P  K +   K   ++P    +    A SGRPG   +DLP D+L+ + +                 +T+G   +  I KA+ +LK +K+P+I
Sbjct:    4 LSGSEMIIQSLIDQGIKYIFGYPGGAVLDIYDSLKSTKKIKHILVRHEQGATHMADGYARATGKIGVVLVTSGPGATNSITGIATAYMDSIPIVVISGQVSSSLIGYDAFQECDMIGISRPIVKHSFLVKKTEDIPITFKKAFWLASSGRPGPIVIDLPKDILN-SYNKKPYIWPIEVNIRSYNPITKGH--SRQIKKAIDILKLSKQPVI 211          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAI (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 59/211 (27.96%), Postives = 94/211 (44.55%), Query Frame = 3
Query:   69 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            + G  +  +SL   G  H+FG  G  V  + + L    G+  I   +EQ            TGK G++L  SGPG  + + G++   +++ P+V+ISG       G   FQE D +   +P  K +   K   ++P    +    A SGRPG   +DLP D+L +  +                  T+G I    I KA+  L +A++P+I
Sbjct:    4 LSGAEMVVRSLIDQGIQHIFGYPGGAVLDIYDALKTVGGIEHILVRHEQAATHMADGYSRSTGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVISGQVASSLIGYDAFQECDMIGISRPIVKHSFLVKKTEDIPIVFKKAFWLASSGRPGPIVIDLPKDILKKD-NKYLYKWPDNINIRSYNPTTKGHI--GQIKKALHTLLKAQRPVI 211          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_SPIPL (Acetolactate synthase (Fragment) OS=Spirulina platensis GN=ilvY PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 58/215 (26.98%), Postives = 94/215 (43.72%), Query Frame = 3
Query:   66 QIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            ++ G      SL   G  H+FG  G   +P+      A Q G ++     +EQ            TGK G+ L  SGPG  + + GL+   +++ P++ I+G   +   G   FQE+D      P  K +   ++ +E+P+ V +    A+SGRPG   +D+P DV +  I                 T          I++A+ L+ EA KPL+
Sbjct:   10 RVTGAFALIDSLRRHGVQHIFGYPGGSNLPIYDEIYRAEQAGEIKHYLVRHEQGAAHAADGYARSTGKVGVCLATSGPGATNLVTGLATAYLDSVPVLAITGQVPRSALGTDAFQEIDIFGITLPIVKHSYLVREPSELPRIVVEAFHLAMSGRPGPVLIDIPKDVGNAQIDYIPVEPGSVRRVGYRPTERGN---PRQINQALQLISEATKPLL 221          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_KLEPN (Acetolactate synthase, catabolic OS=Klebsiella pneumoniae GN=budB PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 49/209 (23.44%), Postives = 86/209 (41.15%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            G  L    L   G   +FG+ G  +  + +  +   +R I   +E            +TGK G+ L  SGPGC + + G++       P+V + G+  + D  +   Q +D V    P +K+A++      + + V+     A  GRPG  ++ LP DV+   +S                    G   +  ID+   L+ +AK P+ +
Sbjct:   13 GADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVS--------GKVLPASGAPQMGAAPDDAIDQVAKLIAQAKNPIFL 213          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVI_ECOLI (Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) GN=ilvI PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 55/211 (26.07%), Postives = 92/211 (43.60%), Query Frame = 3
Query:   69 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            + G  +  +SL   G   +FG  G  V  + + L    G+  +   +EQ            TG+ G++L  SGPG  + + G++   +++ P+V++SG       G   FQE D V   +P  K +   K   ++P+ + +    A SGRPG   +DLP D+L+    +               T T        I +A+  L  AKKP++
Sbjct:    4 LSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTTGH---KGQIKRALQTLVAAKKPVV 211          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVI_SALTY (Acetolactate synthase isozyme 3 large subunit OS=Salmonella typhimurium GN=ilvI PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 56/211 (26.54%), Postives = 91/211 (43.13%), Query Frame = 3
Query:   69 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            + G  +  +SL   G   +FG  G  V  + + L    G+  +   +EQ            TG  G++L  SGPG  + + G++   +++ P+V++SG       G   FQE D V   +P  K +   K   ++P  + +    A SGRPG   +DLP D+L+    +               T T G      I +A+  L  AKKP++
Sbjct:    4 LSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGDVGVVLVTSGPGATNAITGIATAYMDSIPLVILSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPLVLKKAFWLAASGRPGPVVVDLPKDILNPAKKMPYAWPETVSMRSYNPT-TSGH--KGQIKRALQTLASAKKPVV 211          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_LACLA (Acetolactate synthase large subunit OS=Lactococcus lactis subsp. lactis GN=ilvB PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 49/210 (23.33%), Postives = 96/210 (45.71%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQL-GVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            G+ L  ++L   G   +FG  G  +  L +      G++ I   +EQ            +GK G+++  SGPG  + + G+++  +++ P+++ +G       G+  FQE D V    P +K+  + ++  ++P+ V +    A +GRPG   +DLP DV    ++               E  T     +  + + ++ L  +KKP+I+
Sbjct:   12 GSQLVLQTLKELGVEIIFGYPGGAMLPLYDAIHNFEGIQHILARHEQGATHEAEGYAKSSGKVGVVVVTSGPGATNAVTGIADAYLDSVPLLVFTGQVGPLSIGKDAFQEADTVGITAPITKYNYQIRETADIPRIVTEAYYLARTGRPGPVEIDLPKDVSTLEVTEINDPSLNLPHYHESEKAT-----DEQLQELLTELSVSKKPVII 216          
The following BLAST results are available for this feature:
BLAST of FC920497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ILVX_BACSU1.030e-1624.40Acetolactate synthase OS=Bacillus subtilis GN=alsS... [more]
ILVI_BUCAP1.030e-1628.91Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_SCHPO1.345e-1628.93Acetolactate synthase, mitochondrial OS=Schizosacc... [more]
ILVI_BUCSC3.914e-1627.49Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVI_BUCAI8.720e-1627.96Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_SPIPL1.943e-1526.98Acetolactate synthase (Fragment) OS=Spirulina plat... [more]
ILVB_KLEPN3.314e-1523.44Acetolactate synthase, catabolic OS=Klebsiella pne... [more]
ILVI_ECOLI4.328e-1526.07Acetolactate synthase isozyme 3 large subunit OS=E... [more]
ILVI_SALTY2.148e-1426.54Acetolactate synthase isozyme 3 large subunit OS=S... [more]
ILVB_LACLA2.148e-1423.33Acetolactate synthase large subunit OS=Lactococcus... [more]

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Properties
Property NameValue
Genbank descriptionC32009B11EF RVDevelop1 Citrus clementina cDNA clone C32009B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920497 ID=FC920497; Name=FC920497; organism=Citrus clementina; type=EST; length=702bp
GAATATCAAATTTGCTTCCTCCAATGCTTCATCCATCATCTCCATTGCAA
AATTCCCAAAATGCCCAGATCGACGGCAACACCCTGGCGGCCAAATCCTT
GTCACTATTCGGTGCCACCCACATGTTCGGCGTGGTGGGCATTCCCGTTA
CTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGTCCGGTTCATCGCCTTC
CACAATGAGCAGTCCGCTGGCTACGCCGCCTCAGCCTACGGATACCTGAC
TGGAAAACCCGGCATTCTGTTAACTGTTTCCGGTCCGGGTTGCGTGCACG
GTCTGGCTGGTCTCTCGAATGGGATGATTAACACCTGGCCAATCGTCATG
ATATCCGGCTCCTGCGATCAGAAAGATTTTGGCCGCGGCGATTTTCAAGA
ACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCGAAATTTGCTGTAAAAG
CGAAGGACATTACGGAAGTTCCCAAGTGTGTCGCTCAGGTTCTTGAACGG
GCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGGATCTACCCACTGATGT
TTTACATCAAACGATATCGGTATCTGAAGCGGAGAAGCTTCTGAAGGAAG
CGGAGAGTGCCATAGAAACGGTGACGCAAGGGGGGATTGTGAATTCTGAT
ATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAAAGAAGCCGTTGATTGT
GT
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