FC920497

Overview
NameFC920497
Unique NameFC920497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5819 contig Ccv1_Contig5819:118..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_SYNPX (Acetolactate synthase large subunit OS=Synechococcus sp. (strain WH8102) GN=ilvB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 56/220 (25.45%), Postives = 96/220 (43.64%), Query Frame = 3
Query:   69 IDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGI------VNSDIDKAVSLLKEAKKPLI 698
            I G      +L   G   +FG  G   +P+    ++A   G V+ I   +EQ            TGK G+    SGPG  + + G++   +++ P+V+I+G   +   G   FQE D      P  K +   +D  ++   VAQ    A SGRPG   +D+P DV  +  +                +V  GG       +++ +  A+ L+++A++PL+
Sbjct:   21 ISGAAALMDALRRHGVDTIFGYPGGAILPIYDALHIAESEGWVKHILVRHEQAGTHAADAYARATGKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSWVVRDPADLGSIVAQAFLIAASGRPGPVLIDIPKDVGQEQFNYVPVEPG---------SVIPGGFHQPEPPLDAAVAAALDLIEQAQRPLL 231          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_MYCLE (Acetolactate synthase OS=Mycobacterium leprae GN=ilvB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 49/166 (29.52%), Postives = 80/166 (48.19%), Query Frame = 3
Query:   66 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 554
            Q+ G     +SL       +FG+ G  V  + + L     +R +   +EQ           +TGK G+ +  SGPG  + +  L++  +++ P+V I+G   +   G   FQE D      P +K  F V+A D  ++P+ +A+    A SGRPG   +D+P DVL
Sbjct:   44 QLTGAQSVIRSLEELDVEVIFGIPGGAVLLVYDPLFYSKKLRHVLVRHEQGAGHAASGYAHVTGKVGVCMATSGPGATNLVTPLADAQMDSVPVVAITGQVGRSLIGTDAFQEADISGITMPITKHNFLVRAGD--DIPRVLAEAFHIASSGRPGAVLVDIPKDVL 207          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNV (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=ILV2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 38/121 (31.40%), Postives = 62/121 (51.24%), Query Frame = 3
Query:  189 FIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 551
            F+   +EQ           ++GKPG++L  SGPG  + +  + + + +  P+V+  G       G   FQE D V   +  +K+ V  KDI E+P+ + +  + A +GRPG   +DLP DV
Sbjct:  167 FVLPRHEQGAGHMAEGYARVSGKPGVVLVTSGPGATNVITPMQDALSDGVPMVVFCGQVATNLIGSDAFQEADVVGISRSCTKWNVMVKDIAELPRRINEAFKIATTGRPGPVLVDLPKDV 287          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNE (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans GN=ILV2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 38/121 (31.40%), Postives = 62/121 (51.24%), Query Frame = 3
Query:  189 FIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 551
            F+   +EQ           ++GKPG++L  SGPG  + +  + + + +  P+V+  G       G   FQE D V   +  +K+ V  KDI E+P+ + +  + A +GRPG   +DLP DV
Sbjct:  167 FVLPRHEQGAGHMAEGYARVSGKPGVVLVTSGPGATNVITPMQDALSDGVPMVVFCGQVATNLIGSDAFQEADVVGISRSCTKWNVMVKDIAELPRRINEAFKIATTGRPGPVLVDLPKDV 287          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_METAO (Probable acetolactate synthase large subunit OS=Methanococcus aeolicus GN=ilvB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 41/151 (27.15%), Postives = 70/151 (46.36%), Query Frame = 3
Query:  249 TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            +GK G+ +  SGPG  + + G++    ++ P+V ++G    K  G   FQE+D +    P  K   + +   ++P+      E A +GRPG  ++DLP DV    + +                 T G      I KA+ L+  AK+P+I+
Sbjct:   61 SGKVGVCIGTSGPGATNLVTGVATAHSDSSPMVALTGQVPTKLIGNDAFQEIDALGLFMPIVKHNFQIQKTCQIPEIFRSAFEIAQTGRPGPVHIDLPKDVQELELDIDKHPIPSKVKLIGYNPTTIGH--PRQIKKAIKLIASAKRPIIL 209          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVBL_CAEEL (Acetolactate synthase-like protein OS=Caenorhabditis elegans GN=T26C12.1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 38/170 (22.35%), Postives = 78/170 (45.88%), Query Frame = 3
Query:   48 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 557
            Q  + ++  G  L A  L       +F + G  ++ +   A +LG++ +   +E            L    G+    +GPG  + +  + N  +   P+++I G+      GRG  Q++DQ+   +P  K+  + + + ++   V + ++ A SG PG  +++ P DVL+
Sbjct:   49 QVDEKSKRHGGELVASVLKAHDVEEIFVLCGGHISPILVAAEKLGIKIVDTRHEVTAVFAADAVARLRQSIGVAAVTAGPGLTNTITAVKNAQMAESPLLLIGGAAPTLLKGRGALQDIDQMVLFRPLCKYVARVERLRDIVPTVREAIKAAKSGCPGPVFVEFPVDVLY 218          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 36/126 (28.57%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  183 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 560
            +R +   +EQ            +GKPGI +  SGPG ++ ++GL++ + ++ P++ I+G   ++  G   FQE   VE  +  +K      ++ ++P+ V +    A S RPG   +D+P DV  Q
Sbjct:  112 IRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAMNLVSGLADALFDSVPLIAITGQVPRRMIGTMAFQETPVVEVTRTITKHNYLVMEVDDIPRIVREAFFLATSVRPGPVLIDVPKDVQQQ 237          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: GCL_ECOLI (Glyoxylate carboligase OS=Escherichia coli (strain K12) GN=gcl PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 57/199 (28.64%), Postives = 83/199 (41.71%), Query Frame = 3
Query:  111 GATHMFGVVGIPVTSLAN-LAVQLGVRFI-AFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            G T  FGV G  +    + +    G+R I A H E              G  G+ L  SGP     +  L +   ++ PI+ I+G   +    + DFQ +D     KP SK AV  ++   VP+ + Q      SGRPG   +DLP DV    I                  V +       I+KAV +L +A++P+IV
Sbjct:   18 GITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEPL-------PVYKPAASRMQIEKAVEMLIQAERPVIV 209          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: GCL_ECO57 (Glyoxylate carboligase OS=Escherichia coli O157:H7 GN=gcl PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 57/199 (28.64%), Postives = 83/199 (41.71%), Query Frame = 3
Query:  111 GATHMFGVVGIPVTSLAN-LAVQLGVRFI-AFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            G T  FGV G  +    + +    G+R I A H E              G  G+ L  SGP     +  L +   ++ PI+ I+G   +    + DFQ +D     KP SK AV  ++   VP+ + Q      SGRPG   +DLP DV    I                  V +       I+KAV +L +A++P+IV
Sbjct:   18 GITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEPL-------PVYKPAASRMQIEKAVEMLIQAERPVIV 209          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: XSC_RHIME (Probable sulfoacetaldehyde acetyltransferase OS=Rhizobium meliloti GN=xsc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 50/203 (24.63%), Postives = 90/203 (44.33%), Query Frame = 3
Query:   93 KSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            K L + G  H FG++G  +  +++L  + G+RF    +E             TG   + +  +GPG    +  +     N  P++M++     K  G+G FQE+DQ+   +    +  + +D + +P+ + +V+E+A  G      +++P D   Q I V                   GG   + I +A  LL EAK P+I+
Sbjct:   11 KVLQMHGIEHAFGIIGSAMMPVSDLFPKAGIRFWDCAHETNAGMMADGFSRATGTMSMAIGQNGPGVTGFITAMKTAYWNHTPLLMVTPQAANKTIGQGGFQEVDQMAMFEEMVCYQEEVRDPSRIPEVLNRVIEKAWRG-CAPAQINIPRDFWTQVIDVDLPRIVRFER-------PAGG--PAAIAQAARLLSEAKFPVIL 203          
The following BLAST results are available for this feature:
BLAST of FC920497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ILVB_SYNPX1.179e-1225.45Acetolactate synthase large subunit OS=Synechococc... [more]
ILVB_MYCLE1.539e-1229.52Acetolactate synthase OS=Mycobacterium leprae GN=i... [more]
ILVB_CRYNV3.429e-1231.40Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_CRYNE3.429e-1231.40Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_METAO7.639e-1227.15Probable acetolactate synthase large subunit OS=Me... [more]
ILVBL_CAEEL7.639e-1222.35Acetolactate synthase-like protein OS=Caenorhabdit... [more]
ILVB2_BRANA7.639e-1228.57Acetolactate synthase 2, chloroplastic OS=Brassica... [more]
GCL_ECOLI1.303e-1128.64Glyoxylate carboligase OS=Escherichia coli (strain... [more]
GCL_ECO571.303e-1128.64Glyoxylate carboligase OS=Escherichia coli O157:H7... [more]
XSC_RHIME2.903e-1124.63Probable sulfoacetaldehyde acetyltransferase OS=Rh... [more]

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Properties
Property NameValue
Genbank descriptionC32009B11EF RVDevelop1 Citrus clementina cDNA clone C32009B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920497 ID=FC920497; Name=FC920497; organism=Citrus clementina; type=EST; length=702bp
GAATATCAAATTTGCTTCCTCCAATGCTTCATCCATCATCTCCATTGCAA
AATTCCCAAAATGCCCAGATCGACGGCAACACCCTGGCGGCCAAATCCTT
GTCACTATTCGGTGCCACCCACATGTTCGGCGTGGTGGGCATTCCCGTTA
CTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGTCCGGTTCATCGCCTTC
CACAATGAGCAGTCCGCTGGCTACGCCGCCTCAGCCTACGGATACCTGAC
TGGAAAACCCGGCATTCTGTTAACTGTTTCCGGTCCGGGTTGCGTGCACG
GTCTGGCTGGTCTCTCGAATGGGATGATTAACACCTGGCCAATCGTCATG
ATATCCGGCTCCTGCGATCAGAAAGATTTTGGCCGCGGCGATTTTCAAGA
ACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCGAAATTTGCTGTAAAAG
CGAAGGACATTACGGAAGTTCCCAAGTGTGTCGCTCAGGTTCTTGAACGG
GCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGGATCTACCCACTGATGT
TTTACATCAAACGATATCGGTATCTGAAGCGGAGAAGCTTCTGAAGGAAG
CGGAGAGTGCCATAGAAACGGTGACGCAAGGGGGGATTGTGAATTCTGAT
ATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAAAGAAGCCGTTGATTGT
GT
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