FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACIF5 (Chaperone protein dnaK OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NTV++ KRLIGR+F DA VQ D+K  P+KVI        + V     +K+++A++IS+ +L KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPENTVYEVKRLIGRKFDDAEVQKDLKHVPYKVIKADNGDAWVEVR----DKKYSAQQISAFILQKMKKTAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACIF2 (Chaperone protein dnaK OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NTV++ KRLIGR+F DA VQ D+K  P+KVI        + V     +K+++A++IS+ +L KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPENTVYEVKRLIGRKFDDAEVQKDLKHVPYKVIKADNGDAWVEVR----DKKYSAQQISAFILQKMKKTAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_MARMS (Chaperone protein dnaK OS=Marinomonas sp. (strain MWYL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT+F  KRLIGR+F D  VQ D+ + P+K+IA  AD     V  KG++K  A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPTNTLFAVKRLIGRKFKDDVVQKDISMVPYKIIA--ADNGDAWVEVKGDKK--APPQISAEVLKKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_AGRVS (Chaperone protein dnaK OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT+F  KRLIGRR+ D +V+ D  L PF +I G      +    KG    ++  +IS+M+L KM+E AEAYLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPTNTLFAVKRLIGRRYEDPTVEKDKGLVPFPIIKGDNGDAWVEAQGKG----YSPAQISAMILQKMKETAEAYLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_COXBU (Chaperone protein dnaK OS=Coxiella burnetii GN=dnaK PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N   T++  KRLIGRRF D  VQ D+K+ P+K+I        + V  K G+ ++ A  +IS+ VLIKM++ AE YLG  +K+AV+TVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   61 NADRTLYAIKRLIGRRFDDNVVQKDIKMVPYKIIKADNGDAWVEVKDKEGKSQKLAPPQISAQVLIKMKKTAEDYLGHEVKDAVITVPAYFNDSQRQATKDAGKIAGLNV 170          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_COXBR (Chaperone protein dnaK OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N   T++  KRLIGRRF D  VQ D+K+ P+K+I        + V  K G+ ++ A  +IS+ VLIKM++ AE YLG  +K+AV+TVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   61 NADRTLYAIKRLIGRRFDDNVVQKDIKMVPYKIIKADNGDAWVEVKDKEGKSQKLAPPQISAQVLIKMKKTAEDYLGHEVKDAVITVPAYFNDSQRQATKDAGKIAGLNV 170          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_COXBN (Chaperone protein dnaK OS=Coxiella burnetii (strain Dugway 5J108-111) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N   T++  KRLIGRRF D  VQ D+K+ P+K+I        + V  K G+ ++ A  +IS+ VLIKM++ AE YLG  +K+AV+TVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   61 NADRTLYAIKRLIGRRFDDNVVQKDIKMVPYKIIKADNGDAWVEVKDKEGKSQKLAPPQISAQVLIKMKKTAEDYLGHEVKDAVITVPAYFNDSQRQATKDAGKIAGLNV 170          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_COXB2 (Chaperone protein dnaK OS=Coxiella burnetii (strain CbuG_Q212) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N   T++  KRLIGRRF D  VQ D+K+ P+K+I        + V  K G+ ++ A  +IS+ VLIKM++ AE YLG  +K+AV+TVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   61 NADRTLYAIKRLIGRRFDDNVVQKDIKMVPYKIIKADNGDAWVEVKDKEGKSQKLAPPQISAQVLIKMKKTAEDYLGHEVKDAVITVPAYFNDSQRQATKDAGKIAGLNV 170          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_COXB1 (Chaperone protein dnaK OS=Coxiella burnetii (strain CbuK_Q154) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N   T++  KRLIGRRF D  VQ D+K+ P+K+I        + V  K G+ ++ A  +IS+ VLIKM++ AE YLG  +K+AV+TVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   61 NADRTLYAIKRLIGRRFDDNVVQKDIKMVPYKIIKADNGDAWVEVKDKEGKSQKLAPPQISAQVLIKMKKTAEDYLGHEVKDAVITVPAYFNDSQRQATKDAGKIAGLNV 170          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: HSP7M_SOLTU (Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT+   KRLIGRRF D   Q +MK+ P+K++ G      +  N     +Q++  +I + +L KM+E AEAYLG +I  AV+TVPAYFND+QRQA KDAG IAGL+V
Sbjct:  116 NPTNTLSGTKRLIGRRFDDPQTQKEMKMVPYKIVRGSNGDAWVEAN----GQQYSPTQIGAFILTKMKETAEAYLGKSINKAVITVPAYFNDAQRQAIKDAGAIAGLDV 220          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ACIF58.208e-2654.13Chaperone protein dnaK OS=Acidithiobacillus ferroo... [more]
DNAK_ACIF28.208e-2654.13Chaperone protein dnaK OS=Acidithiobacillus ferroo... [more]
DNAK_MARMS1.072e-2558.72Chaperone protein dnaK OS=Marinomonas sp. (strain ... [more]
DNAK_AGRVS1.072e-2555.05Chaperone protein dnaK OS=Agrobacterium vitis (str... [more]
DNAK_COXBU1.400e-2555.45Chaperone protein dnaK OS=Coxiella burnetii GN=dna... [more]
DNAK_COXBR1.400e-2555.45Chaperone protein dnaK OS=Coxiella burnetii (strai... [more]
DNAK_COXBN1.400e-2555.45Chaperone protein dnaK OS=Coxiella burnetii (strai... [more]
DNAK_COXB21.400e-2555.45Chaperone protein dnaK OS=Coxiella burnetii (strai... [more]
DNAK_COXB11.400e-2555.45Chaperone protein dnaK OS=Coxiella burnetii (strai... [more]
HSP7M_SOLTU1.829e-2552.29Heat shock 70 kDa protein, mitochondrial OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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