FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_RHILO (Chaperone protein dnaK OS=Rhizobium loti GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.949e-25
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRR+ D   + D KL P+K++ G      +     G +KQ +  +IS+M+L KM+E AEAYLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPENTIFAVKRLIGRRYDDPVTEKDKKLVPYKIVKGDNGDAWVEA---GGKKQ-SPSQISAMILQKMKETAEAYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSYWF (Chaperone protein dnaK OS=Psychrobacter sp. (strain PRwf-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.949e-25
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF D  VQ D+ + P+K++        + VN    +K+ A  +IS+ +L KM++ AE YLG  + +AVVTVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   60 NPNNTLYAIKRLIGRRFDDKVVQKDIGMVPYKIVKADNGDAWVEVN----DKKMAPPQISAEILQKMKKTAEDYLGEKVTDAVVTVPAYFNDSQRQATKDAGKIAGLNV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ALTMD (Chaperone protein dnaK OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.949e-25
Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + PFK++   AD     V  KGE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPENTLFAIKRLIGRRFQDKEVQRDIDIMPFKIVG--ADNGDAWVEAKGEK--MAPPQVSAEVLKKMKKTAEDYLGEEVTGAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VIBPR (Chaperone protein dnaK OS=Vibrio proteolyticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT+F  KRLIGRRF D  VQ D+++ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPTNTLFAIKRLIGRRFEDEEVQRDIEIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEEVTGAVITVPAYFNDAQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VIBPA (Chaperone protein dnaK OS=Vibrio parahaemolyticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT+F  KRLIGRRF D  VQ D+++ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPTNTLFAIKRLIGRRFEDEEVQRDIEIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEEVTGAVITVPAYFNDAQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_THIDA (Chaperone protein dnaK OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+K++        + V     +K+ AA+++S+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTIFAVKRLIGRRFEEKEVQKDIGLMPYKIVKADNGDAWVEVR----DKKMAAQQVSAEILRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SYNAS (Chaperone protein dnaK OS=Syntrophus aciditrophicus (strain SB) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NTV+  KRLIGR+++   VQ D  + PFK+   P     I V  +     ++  EISSMVL+KM++ AE YLG  I +AV+TVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   61 NSENTVYAVKRLIGRKYNSKEVQYDKSISPFKISEAPNGDAQIEVRGRA----YSPAEISSMVLVKMKQTAEDYLGEKITDAVITVPAYFNDSQRQATKDAGKIAGLNV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SHEPA (Chaperone protein dnaK OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNTVF  KRLIGRRF D  VQ D+ + PFK+I+  AD     V  +G  ++ A  +IS+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   60 NPTNTVFAIKRLIGRRFKDDEVQRDVDIMPFKIIS--ADNGDAWVEAQG--RKMAPPQISAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SHEHH (Chaperone protein dnaK OS=Shewanella halifaxensis (strain HAW-EB4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNTV+  KRLIGRRF D  VQ D+ + PFK+I+  AD     V  +G  K+ A  +IS+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   60 NPTNTVYAIKRLIGRRFKDDEVQRDVDIMPFKIIS--ADNGDAWVEAQG--KKMAPPQISAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PECCP (Chaperone protein dnaK OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D  + P+K+IA       + V    ++++ A  +IS+ VL KM++ AE YLG TI  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRRFKDEEVQRDANIMPYKIIAADNGDAWLEV----KDQKMAPPQISAEVLKKMKKTAEDYLGETISEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHILO6.949e-2554.13Chaperone protein dnaK OS=Rhizobium loti GN=dnaK P... [more]
DNAK_PSYWF6.949e-2554.13Chaperone protein dnaK OS=Psychrobacter sp. (strai... [more]
DNAK_ALTMD6.949e-2556.88Chaperone protein dnaK OS=Alteromonas macleodii (s... [more]
DNAK_VIBPR9.075e-2555.05Chaperone protein dnaK OS=Vibrio proteolyticus GN=... [more]
DNAK_VIBPA9.075e-2555.05Chaperone protein dnaK OS=Vibrio parahaemolyticus ... [more]
DNAK_THIDA9.075e-2552.29Chaperone protein dnaK OS=Thiobacillus denitrifica... [more]
DNAK_SYNAS9.075e-2555.05Chaperone protein dnaK OS=Syntrophus aciditrophicu... [more]
DNAK_SHEPA9.075e-2556.88Chaperone protein dnaK OS=Shewanella pealeana (str... [more]
DNAK_SHEHH9.075e-2556.88Chaperone protein dnaK OS=Shewanella halifaxensis ... [more]
DNAK_PECCP9.075e-2555.05Chaperone protein dnaK OS=Pectobacterium carotovor... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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