FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_DESPS (Chaperone protein dnaK OS=Desulfotalea psychrophila GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  TV+ AKRLIGR+F+DA VQ   ++ PF ++ G +    I V    E  ++   EIS+MVL KM++ AE YLG  +  AVVTVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPERTVYAAKRLIGRKFTDAEVQRSQEVSPFDIVEGISGSVAIQV----EGHKYRPAEISAMVLGKMKQTAEEYLGEEVTEAVVTVPAYFNDSQRQATKDAGKIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_CAUSK (Chaperone protein dnaK OS=Caulobacter sp. (strain K31) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 55/109 (50.46%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT+F  KRLIGR F+D  V  D  + P++++ GP     +    K   K ++ +E+S+ +L KM+E AE++LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPTNTLFAIKRLIGRNFADPVVAKDKAMVPYEIVKGPTGDAWV----KAHGKDYSPQEVSAFILQKMKEAAESHLGEPVTKAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BUCBP (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGR+F+D  VQ D+K+ P+K+I        I +    + K+ A  +IS+ +L KM++ AE YLG +I+ AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRKFTDNEVQRDIKIMPYKIIQSENGDAWINI----KNKKLAPPQISAEILKKMKKTAEDYLGESIQEAVITVPAYFNDAQRQATKDAGRIAGLKV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BART1 (Chaperone protein dnaK OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dnaK PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  TVF  KRLIGRRF D  V+ D  L P+K++ G  D     V   G  K+++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPEGTVFAVKRLIGRRFDDPMVEKDKALVPYKIVKG--DNGDAWVEEAG--KKYSPSQISAMILQKMKETAESYLGEKVEQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: GRP75_CHICK (Stress-70 protein, mitochondrial OS=Gallus gallus GN=HSPA9 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGRRF D+ V+ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG   KNAV+TVPAYFNDSQRQATKDAG I+GLNV
Sbjct:  114 NPHNTFYATKRLIGRRFDDSEVKKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHPAKNAVITVPAYFNDSQRQATKDAGQISGLNV 218          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VIBFM (Chaperone protein dnaK OS=Vibrio fischeri (strain MJ11) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+++ PFK++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AVVTVPAYFND+QRQATKDAG IAGL+V
Sbjct:   60 NPQNTLFAIKRLIGRRFEDEEVQRDIEIMPFKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEEVTGAVVTVPAYFNDAQRQATKDAGRIAGLDV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VESOH (Chaperone protein dnaK OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF + +VQ D+ L P+K++        + V    + K+ AA EIS+ V+ KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGLNV
Sbjct:   62 NPENTLYAIKRLIGRRFEEDAVQKDIDLVPYKIVKADNGDAWVKV----KNKKMAAPEISAKVIGKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGKIAGLNV 166          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_HYPNA (Chaperone protein dnaK OS=Hyphomonas neptunium (strain ATCC 15444) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T +  KRLIGR F D + Q D  + PF ++  P     +    KG +K ++ +EIS+ +L KM+E AEAYLG+ +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPDFTFYAIKRLIGRTFDDPTAQKDKAMSPFSIVKAPNGDAWV----KGRDKDYSPQEISAFILTKMKETAEAYLGSKVTQAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_CAUCR (Chaperone protein dnaK OS=Caulobacter crescentus GN=dnaK PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT+F  KRLIGR  SD  V+ D  + P++++ GP     +    K   K ++ +E+S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPTNTLFAIKRLIGRTASDPVVEKDKGMVPYEIVKGPTGDAWV----KAHGKDYSPQEVSAFILQKMKEAAEAHLGEPVTKAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BAUCH (Chaperone protein dnaK OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 2
Query:    5 AMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            A NP NT+F  KRLIGRRF D  VQ D+ + P+K+IA  AD     +  KG++   A  ++S+ +L KM++ AE YLG ++  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   59 ATNPKNTLFAIKRLIGRRFEDEEVQRDVDIMPYKIIA--ADNGDAWLEIKGQK--IAPPQVSAEILKKMKKTAEDYLGESVTEAVITVPAYFNDTQRQATKDAGRIAGLEV 165          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_DESPS9.075e-2555.96Chaperone protein dnaK OS=Desulfotalea psychrophil... [more]
DNAK_CAUSK9.075e-2550.46Chaperone protein dnaK OS=Caulobacter sp. (strain ... [more]
DNAK_BUCBP9.075e-2553.21Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BART19.075e-2555.05Chaperone protein dnaK OS=Bartonella tribocorum (s... [more]
GRP75_CHICK1.185e-2453.21Stress-70 protein, mitochondrial OS=Gallus gallus ... [more]
DNAK_VIBFM1.185e-2455.96Chaperone protein dnaK OS=Vibrio fischeri (strain ... [more]
DNAK_VESOH1.185e-2454.13Chaperone protein dnaK OS=Vesicomyosocius okutanii... [more]
DNAK_HYPNA1.185e-2451.38Chaperone protein dnaK OS=Hyphomonas neptunium (st... [more]
DNAK_CAUCR1.185e-2451.38Chaperone protein dnaK OS=Caulobacter crescentus G... [more]
DNAK_BAUCH1.185e-2454.05Chaperone protein dnaK OS=Baumannia cicadellinicol... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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