FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PASMU (Chaperone protein dnaK OS=Pasteurella multocida GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + PF+++A       +GV  KGE+   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRRFQDEEVQRDVSIMPFEIVAADNGDAWVGV--KGEK--MAPPQISAEVLKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_NITMU (Chaperone protein dnaK OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF++  VQ D+K+ P+ +I   AD     +  +G  K+ A  E+S+ VL+KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFNEEMVQRDIKMVPYTIIK--ADNNDAWIEVRG--KKVAPPEVSAQVLMKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_METCA (Chaperone protein dnaK OS=Methylococcus capsulatus GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRR+ D  VQ D+K+ P+ ++        + V      K+ A  EIS+ VL+K+++ AEAYLG  +K AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTLFAIKRLIGRRYKDDVVQKDIKMVPYTIVEAENGDAWVEVG----GKKMAPPEISARVLMKLKKDAEAYLGEEVKEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_MESSB (Chaperone protein dnaK OS=Mesorhizobium sp. (strain BNC1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT F  KRLIGRRF D  V+ D KL P+K++   AD     V   G +  ++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPENTFFAIKRLIGRRFEDPMVEKDKKLVPYKIVK--ADNGDAWVESHGTK--YSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_GRABC (Chaperone protein dnaK OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP+NT++  KRLIGRR+ D +V  D  L P+ ++ G  D     V  +GE+  +A  +IS+ VL KM+E AEAYLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPSNTLYAVKRLIGRRYDDPTVAKDKDLVPYAIVRG--DNGDAWVEARGEK--YAPSQISAFVLSKMKETAEAYLGEPVTQAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSM (Chaperone protein dnaK OS=Geobacter sp. (strain M21) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 59/109 (54.13%), Postives = 80/109 (73.39%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGR+F   +V+ D+ + PFK++   AD     V  +G++  ++  EIS+MVL KM++ AE YLG T+ +AV+TVPAYF+DSQRQATKDAG IAGLNV
Sbjct:   61 NPENTLYAIKRLIGRKFDTEAVKKDIAISPFKIVK--ADNSDAWVEVRGQK--YSPPEISAMVLQKMKKTAEDYLGETVTDAVITVPAYFDDSQRQATKDAGKIAGLNV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ERWCT (Chaperone protein dnaK OS=Erwinia carotovora subsp. atroseptica GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D  + P+K++A       + V    ++++ A  +IS+ VL KM++ AE YLG TI  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFKDEEVQRDSNIMPYKIVAADNGDAWLEV----KDQKMAPPQISAEVLKKMKKTAEDYLGETITEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_DESAH (Chaperone protein dnaK OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NTVF  KRLIGR+F    +QGD K+ P+K+ A       I  N +G  KQ +  EISS +L  +++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPENTVFGVKRLIGRKFDSPQIQGDKKVLPYKIEASANGDTRI--NLRG--KQHSPAEISSFILANIKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGKIAGLTV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BUCAT (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGR+F D  VQ D+K+ P+ ++        I V    ++++ A  +IS+ VL KM++ AE YLG TIK AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRKFKDDEVQRDIKIMPYNIVNSDNGDAWIDV----KKQKMAPPQISAEVLKKMKKTAEDYLGETIKEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BUCAI (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGR+F D  VQ D+K+ P+ ++        I V    ++++ A  +IS+ VL KM++ AE YLG TIK AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRKFKDDEVQRDIKIMPYNIVNSDNGDAWIDV----KKQKMAPPQISAEVLKKMKKTAEDYLGETIKEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PASMU1.548e-2455.05Chaperone protein dnaK OS=Pasteurella multocida GN... [more]
DNAK_NITMU1.548e-2455.05Chaperone protein dnaK OS=Nitrosospira multiformis... [more]
DNAK_METCA1.548e-2454.13Chaperone protein dnaK OS=Methylococcus capsulatus... [more]
DNAK_MESSB1.548e-2455.05Chaperone protein dnaK OS=Mesorhizobium sp. (strai... [more]
DNAK_GRABC1.548e-2455.05Chaperone protein dnaK OS=Granulibacter bethesdens... [more]
DNAK_GEOSM1.548e-2454.13Chaperone protein dnaK OS=Geobacter sp. (strain M2... [more]
DNAK_ERWCT1.548e-2454.13Chaperone protein dnaK OS=Erwinia carotovora subsp... [more]
DNAK_DESAH1.548e-2455.05Chaperone protein dnaK OS=Desulfobacterium autotro... [more]
DNAK_BUCAT1.548e-2454.13Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BUCAI1.548e-2454.13Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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