FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XANOR (Chaperone protein dnaK OS=Xanthomonas oryzae pv. oryzae GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFTDAEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XANOP (Chaperone protein dnaK OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFTDAEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XANOM (Chaperone protein dnaK OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFTDAEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VIBSL (Chaperone protein dnaK OS=Vibrio splendidus (strain LGP32) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF D  VQ D+++ PF ++   AD     V  +G++   AA ++S+ VL KM++ AE +LG  +  AVVTVPAYFND+QRQATKDAG IAGL+V
Sbjct:   60 NPQNTLYAIKRLIGRRFEDEEVQRDIEIMPFNIVK--ADNGDAWVEAQGQK--MAAPQVSAEVLKKMKKTAEDFLGEEVTGAVVTVPAYFNDAQRQATKDAGRIAGLDV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SOLUE (Chaperone protein dnaK OS=Solibacter usitatus (strain Ellin6076) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NTVF  KR +GRR+ +  V  +MK+ P+KV+ G      + +      K+++  EIS+M+L K++E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPENTVFSIKRFMGRRYDE--VNEEMKMVPYKVVRGENGDARVDIM----GKKYSPPEISAMILTKLKEAAESYLGEKVTQAVITVPAYFNDAQRQATKDAGKIAGLDV 163
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SHESR (Chaperone protein dnaK OS=Shewanella sp. (strain MR-7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT F  KRLIGRRF D  VQ D+ + PFK+I   AD     V  +G +   A  ++S+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   60 NPNNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIQ--ADNGDAWVESRGNK--MAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SHESM (Chaperone protein dnaK OS=Shewanella sp. (strain MR-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT F  KRLIGRRF D  VQ D+ + PFK+I   AD     V  +G +   A  ++S+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   60 NPNNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIQ--ADNGDAWVESRGNK--MAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSYIN (Chaperone protein dnaK OS=Psychromonas ingrahamii (strain 37) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRR+ D  VQ D+K+ P+K++   AD     V   G +   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPQNTLFAIKRLIGRRYEDEEVQRDIKIMPYKIVK--ADNGDAWVEAHGNK--MAPPQISAEVLKKMKKTAEDYLGEKVTGAVITVPAYFNDAQRQATKDAGRIAGLEV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA6 (Chaperone protein dnaK OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 62/109 (56.88%), Postives = 73/109 (66.97%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + PF +I   AD     V  K E+   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRRFEDKEVQRDIDIMPFDIIK--ADNGDAWVQAKDEK--LAPPQISAEVLKKMKKTAEDYLGEEVTAAVITVPAYFNDSQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_WIGBR (Chaperone protein dnaK OS=Wigglesworthia glossinidia brevipalpis GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 55/109 (50.46%), Postives = 79/109 (72.48%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT F  KRLIGR+F+D  VQ D+ + P+K+++  ++   + +N K ++   A  +IS+ +L KM++ AE Y+G +I  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   65 NPKNTFFAIKRLIGRKFTDHEVQRDVNIMPYKIVS--SENGDVWLNVKNQK--VAPPQISAEILKKMKKTAEDYIGKSITEAVITVPAYFNDTQRQATKDAGKIAGLDV 169
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_XANOR2.919e-2352.29Chaperone protein dnaK OS=Xanthomonas oryzae pv. o... [more]
DNAK_XANOP2.919e-2352.29Chaperone protein dnaK OS=Xanthomonas oryzae pv. o... [more]
DNAK_XANOM2.919e-2352.29Chaperone protein dnaK OS=Xanthomonas oryzae pv. o... [more]
DNAK_VIBSL2.919e-2353.21Chaperone protein dnaK OS=Vibrio splendidus (strai... [more]
DNAK_SOLUE2.919e-2350.46Chaperone protein dnaK OS=Solibacter usitatus (str... [more]
DNAK_SHESR2.919e-2354.13Chaperone protein dnaK OS=Shewanella sp. (strain M... [more]
DNAK_SHESM2.919e-2354.13Chaperone protein dnaK OS=Shewanella sp. (strain M... [more]
DNAK_PSYIN2.919e-2354.13Chaperone protein dnaK OS=Psychromonas ingrahamii ... [more]
DNAK_PSEA62.919e-2356.88Chaperone protein dnaK OS=Pseudoalteromonas atlant... [more]
DNAK_WIGBR3.813e-2350.46Chaperone protein dnaK OS=Wigglesworthia glossinid... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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