FC920664 | Citrus Genome Database

Overview


Name	FC920664
Unique Name	FC920664
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	339

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10212	contig	Ccv1_Contig10212:291..629.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_STRM5 (Chaperone protein dnaK OS=Stenotrophomonas maltophilia (strain R551-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFTDAEVQKDIAHVPYSILAHDNGDAWVATS---DAKKMAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_RHIME (Chaperone protein dnaK OS=Rhizobium meliloti GN=dnaK PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGR F D + Q D  + P+K++   AD     V   G    ++  +IS+M+L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPENTLFAIKRLIGRTFEDPTTQKDKGMVPYKIVK--ADNGDAWVEAHGTS--YSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLDV 165

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEU5 (Chaperone protein dnaK OS=Pseudomonas stutzeri (strain A1501) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+K+ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPQNTLYAVKRLIGRRFEEDVVQKDIKMVPYTIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEF5 (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+++ P+K++    +   + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPHNTLYAVKRLIGRRFDEEVVQKDIQMVPYKIVKADNNDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_POLSJ (Chaperone protein dnaK OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT++  KRLIGR+F++  VQ D+ L P+K+ A  AD     V  +G  KQ +A+++S+ +L KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NAKNTLYAIKRLIGRKFTEKEVQKDINLMPYKIAA--ADNGDAWVEVRG--KQISAQQVSADILRKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_POLNS (Chaperone protein dnaK OS=Polynucleobacter necessarius (strain STIR1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRL+GR+F+D  VQ D+ L P+ +I        +    +  +K+ A +++S+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTIYAVKRLMGRKFTDPEVQKDIGLMPYAIIQADNGDAWV----EARDKKMAPQQVSAEILRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_HAEIN (Chaperone protein dnaK OS=Haemophilus influenzae GN=dnaK PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG ++  AV+TVPAYFND+QRQAT DAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGESVTEAVITVPAYFNDAQRQATIDAGKIAGLDV 164

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_HAEI8 (Chaperone protein dnaK OS=Haemophilus influenzae (strain 86-028NP) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG ++  AV+TVPAYFND+QRQAT DAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGESVTEAVITVPAYFNDAQRQATIDAGKIAGLDV 164

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_DICNV (Chaperone protein dnaK OS=Dichelobacter nodosus (strain VCS1703A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 56/109 (51.38%), Postives = 72/109 (66.06%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+ L P+ ++        + +    + K+ A  EIS+ +L KM++  E YLG TI  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   60 NPKNTLYAIKRLIGRRFDEKEVQKDINLVPYNIVKSDNGDAWVEI----DGKKMAPPEISARILQKMKKTVEDYLGETITEAVITVPAYFNDSQRQATKDAGRIAGLEV 164

[Close]

BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURXL (Chaperone protein dnaK OS=Burkholderia xenovorans (strain LB400) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 2

Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+ L P+K+I        + V     +++ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLYAVKRLIGRRFEEKEVQKDIGLMPYKIIKADNGDAWVEVR----DQKLAPPQISAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165

The following BLAST results are available for this feature:

BLAST of FC920664 vs. ExPASy Swiss-Prot

BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNAK_STRM5	3.813e-23	51.38	Chaperone protein dnaK OS=Stenotrophomonas maltoph...	[more]
DNAK_RHIME	3.813e-23	52.29	Chaperone protein dnaK OS=Rhizobium meliloti GN=dn...	[more]
DNAK_PSEU5	3.813e-23	54.13	Chaperone protein dnaK OS=Pseudomonas stutzeri (st...	[more]
DNAK_PSEF5	3.813e-23	50.46	Chaperone protein dnaK OS=Pseudomonas fluorescens ...	[more]
DNAK_POLSJ	3.813e-23	52.29	Chaperone protein dnaK OS=Polaromonas sp. (strain ...	[more]
DNAK_POLNS	3.813e-23	48.62	Chaperone protein dnaK OS=Polynucleobacter necessa...	[more]
DNAK_HAEIN	3.813e-23	54.13	Chaperone protein dnaK OS=Haemophilus influenzae G...	[more]
DNAK_HAEI8	3.813e-23	54.13	Chaperone protein dnaK OS=Haemophilus influenzae (...	[more]
DNAK_DICNV	3.813e-23	51.38	Chaperone protein dnaK OS=Dichelobacter nodosus (s...	[more]
DNAK_BURXL	3.813e-23	52.29	Chaperone protein dnaK OS=Burkholderia xenovorans ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT