FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_AGGAC (Chaperone protein dnaK OS=Aggregatibacter actinomycetemcomitans GN=dnaK PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.813e-23
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  V+ D+ + PF +    AD     V  KGE+   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPKNTLFAIKRLIGRRFEDEEVKRDIDIMPFAITK--ADNGDAWVEVKGEK--LAPPQISAEVLKKMKKAAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: HSP7E_DROME (Heat shock 70 kDa protein cognate 5 OS=Drosophila melanogaster GN=Hsc70-5 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 56/109 (51.38%), Postives = 71/109 (65.14%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT +  KRLIGRRF D  V+ D+    +KV+        +      + K ++  +I + +L+KM+E AEAYL   +KNAVVTVPAYFNDSQRQATKDAG IAGLNV
Sbjct:  111 NSANTFYATKRLIGRRFDDPEVKKDITNLSYKVVKASNGDAWVSST---DGKVYSPSQIGAFILMKMKETAEAYLNTPVKNAVVTVPAYFNDSQRQATKDAGQIAGLNV 216          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_STRMK (Chaperone protein dnaK OS=Stenotrophomonas maltophilia (strain K279a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFTDAEVQKDIAHVPYSILAHDNGDAWVATS---DGKKMAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_RALEJ (Chaperone protein dnaK OS=Ralstonia eutropha (strain JMP134) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGR+F +  VQ D+ L P+ ++        +GV     +++ A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPRNTLYAVKRLIGRKFEEKEVQKDIGLMPYSIVKADNGDAWVGVR----DQKLAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEMY (Chaperone protein dnaK OS=Pseudomonas mendocina (strain ymp) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+++ P+K++    +   + VN     ++ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPHNTLYAVKRLIGRRFDEDVVQKDIQMVPYKIVKADNNDAWVEVN----GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PROMH (Chaperone protein dnaK OS=Proteus mirabilis (strain HI4320) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT+F  KRLIGRRF DA VQ D+ + P+K+I   AD     V  + E+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NSQNTLFAIKRLIGRRFEDAEVQRDVSIMPYKIIK--ADNGDAWVEARNEK--MAPPQVSAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PARL1 (Chaperone protein dnaK OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT+F  KRLIGR + D + Q D  + P+ ++  P     +    +   ++++  +IS+ +L KM+E AE+YLG  ++ AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPTNTLFAIKRLIGRSYDDPTTQKDKGMVPYDIVKAPNGDAWV----EAHGEKYSPSQISAFILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_HAEIE (Chaperone protein dnaK OS=Haemophilus influenzae (strain PittEE) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQAT DAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGEAVTEAVITVPAYFNDAQRQATIDAGKIAGLDV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURVG (Chaperone protein dnaK OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 61/109 (55.96%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYAIIK--ADNGDAWVEAHGEK--LAPPQISAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURTA (Chaperone protein dnaK OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_AGGAC3.813e-2355.05Chaperone protein dnaK OS=Aggregatibacter actinomy... [more]
HSP7E_DROME4.980e-2351.38Heat shock 70 kDa protein cognate 5 OS=Drosophila ... [more]
DNAK_STRMK4.980e-2351.38Chaperone protein dnaK OS=Stenotrophomonas maltoph... [more]
DNAK_RALEJ4.980e-2349.54Chaperone protein dnaK OS=Ralstonia eutropha (stra... [more]
DNAK_PSEMY4.980e-2351.38Chaperone protein dnaK OS=Pseudomonas mendocina (s... [more]
DNAK_PROMH4.980e-2354.13Chaperone protein dnaK OS=Proteus mirabilis (strai... [more]
DNAK_PARL14.980e-2347.71Chaperone protein dnaK OS=Parvibaculum lavamentivo... [more]
DNAK_HAEIE4.980e-2354.13Chaperone protein dnaK OS=Haemophilus influenzae (... [more]
DNAK_BURVG4.980e-2355.96Chaperone protein dnaK OS=Burkholderia vietnamiens... [more]
DNAK_BURTA4.980e-2355.05Chaperone protein dnaK OS=Burkholderia thailandens... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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