FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURCJ (Chaperone protein dnaK OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURCH (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain HI2424) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURCC (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain MC0-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURCA (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain AU 1054) GN=dnaK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ZYMMO (Chaperone protein dnaK OS=Zymomonas mobilis GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT+F  KRLIGRRF D   + D +L P+ ++ G      +    K   + ++  +IS+ +L KM+E AE+YLG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NSENTIFAVKRLIGRRFDDPVTKRDTELVPYHIVRGSNGDAWV----KAGGQDYSPSQISAFILQKMKETAESYLGETVDQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VEREI (Chaperone protein dnaK OS=Verminephrobacter eiseniae (strain EF01-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 54/109 (49.54%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGR+F++  VQ D+ L P+K++A       I V       + +A+++S+ +L KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPKNTLYAVKRLIGRKFTEKEVQKDIDLMPYKIVAAENGDAWIEVR----GTKLSAQQVSADILRKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP5 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisA53) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T F  KRLIGRR+ D  V+ D KL P+K++        +    + +   ++  ++S+ +L KM+E AEA+LGA +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPERTFFAVKRLIGRRYDDPMVEKDKKLVPYKIVKASNGDAWV----EADANTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_RALME (Chaperone protein dnaK OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dnaK PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGR+F +  VQ D+ L P+ ++        +GV     +++ A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPRNTLYAVKRLIGRKFEEKEVQKDIGLMPYAIVKADNGDAWVGVR----DQKLAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_METSB (Chaperone protein dnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T F  KRLIGR + D   + DM L P+K+I        +    + + KQ++  +IS+ +L KM+E AEAYLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPERTFFAIKRLIGRTYDDPMTKKDMGLVPYKIIRASNGDAWV----EADGKQYSPSQISAFILQKMKETAEAYLGQPVSQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURPS (Chaperone protein dnaK OS=Burkholderia pseudomallei GN=dnaK PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYAIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BURCJ4.980e-2355.05Chaperone protein dnaK OS=Burkholderia cepacia (st... [more]
DNAK_BURCH4.980e-2355.05Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCC4.980e-2355.05Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCA4.980e-2355.05Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_ZYMMO6.504e-2349.54Chaperone protein dnaK OS=Zymomonas mobilis GN=dna... [more]
DNAK_VEREI6.504e-2349.54Chaperone protein dnaK OS=Verminephrobacter eiseni... [more]
DNAK_RHOP56.504e-2348.62Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RALME6.504e-2349.54Chaperone protein dnaK OS=Ralstonia metallidurans ... [more]
DNAK_METSB6.504e-2350.46Chaperone protein dnaK OS=Methylocella silvestris ... [more]
DNAK_BURPS6.504e-2355.05Chaperone protein dnaK OS=Burkholderia pseudomalle... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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