FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BORBR (Chaperone protein dnaK OS=Bordetella bronchiseptica GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGR+F + +VQ D+ L P+ ++   AD     V  +G  K+ A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLYAVKRLIGRKFDEKAVQKDIDLMPYSIVK--ADNGDAWVEVRG--KKLAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACTPJ (Chaperone protein dnaK OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQAT DAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGEAVTEAVITVPAYFNDAQRQATIDAGRIAGLDV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACTP7 (Chaperone protein dnaK OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQAT DAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGEAVTEAVITVPAYFNDAQRQATIDAGRIAGLDV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACTP2 (Chaperone protein dnaK OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQAT DAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGEAVTEAVITVPAYFNDAQRQATIDAGRIAGLDV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_THICR (Chaperone protein dnaK OS=Thiomicrospira crunogena (strain XCL-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.494e-23
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRR  DA V+ D  +  +K+IA       + V     +K+ + +E+S+  L+KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPENTLFAIKRLIGRRADDAVVEKDKDMVSYKIIAADNGDAWVQVG----DKKLSPQEVSARTLMKMKKTAEDYLGHEVTEAVITVPAYFNDSQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_THEYD (Chaperone protein dnaK OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.494e-23
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRL+GR+++   VQ   K  P+K++  P     + +      K+++  EIS+M+L K+++ AE YLG  +  AV+TVPAYF+DSQRQATKDAG IAGLNV
Sbjct:   61 NPENTIFSIKRLMGRKYNSQEVQEAKKRLPYKIVEAPNGDAHVEIM----GKRYSPPEISAMILQKLKQAAEDYLGEPVTEAVITVPAYFDDSQRQATKDAGRIAGLNV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAE (Chaperone protein dnaK OS=Pseudomonas aeruginosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.494e-23
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPQNTLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAB (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.494e-23
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPQNTLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA8 (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.494e-23
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPQNTLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA7 (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain PA7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.494e-23
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+++ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPQNTLYAVKRLIGRRFEENVVQKDIQMVPYSIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BORBR6.504e-2352.29Chaperone protein dnaK OS=Bordetella bronchiseptic... [more]
DNAK_ACTPJ6.504e-2354.13Chaperone protein dnaK OS=Actinobacillus pleuropne... [more]
DNAK_ACTP76.504e-2354.13Chaperone protein dnaK OS=Actinobacillus pleuropne... [more]
DNAK_ACTP26.504e-2354.13Chaperone protein dnaK OS=Actinobacillus pleuropne... [more]
DNAK_THICR8.494e-2351.38Chaperone protein dnaK OS=Thiomicrospira crunogena... [more]
DNAK_THEYD8.494e-2348.62Chaperone protein dnaK OS=Thermodesulfovibrio yell... [more]
DNAK_PSEAE8.494e-2353.21Chaperone protein dnaK OS=Pseudomonas aeruginosa G... [more]
DNAK_PSEAB8.494e-2353.21Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PSEA88.494e-2353.21Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PSEA78.494e-2353.21Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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