FC920672

Overview
NameFC920672
Unique NameFC920672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:4..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  505 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPPR
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  505 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPPR
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  505 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPPR
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  505 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPPR
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  427 DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            DK+ P D+     VGV+++ Y I   LP + D  V  M V+EKP  TY+DVGG  +QIE++ E + LPM   +KF  +GI  P+
Sbjct:  138 DKLKPNDL-----VGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPK 216          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PL + +  + I  N+     ++     + +VV +   +    ++    V + R+   +   LPP+ D S+ M+   EKPDVTY DVGG   Q +++RE VELP+   + + ++GIDPPR
Sbjct:   87 PLVIGQFMEAIDQNTG----IVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPR 201          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 45/158 (28.48%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  217 KKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQ----PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            KK+  L  ++++   L  P +    S+ Q    EQ    PL V    + +    +D   +I      ++ V +   V    +E G  V ++     +   L  ++DP V +M +E+ P  TY D+GG +EQI++++E VELP+ +PE + ++GI PP+
Sbjct:   51 KKLAHLLSLEDNILSLCEPDKSSEGSNSQKHVVEQLRGSPLSVGTLEEFV----DDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNYKDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPK 204          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 37/119 (31.09%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            P+ V    +II  N      +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M +E+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PP+
Sbjct:  105 PMSVGNLEEIIDDNHA----IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPK 219          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  505 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            LPP  D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPPR
Sbjct:  143 LPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  403 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            + FVV +   V    ++    V + R+   I   LPP++D ++ +M   EKP VTY DVGG   Q ++++E VELP+L  + + ++GIDPP+
Sbjct:   78 SNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQ 169          
The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PRS6B_RAT2.490e-1151.7226S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA2.490e-1151.7226S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN2.490e-1151.7226S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN2.490e-1151.7226S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6A_YEAST2.490e-1142.8626S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS6B_ASPNG3.252e-1131.9326S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS4_ENCCU3.252e-1128.4826S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS4_DROME3.252e-1131.0926S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS6B_MOUSE4.247e-1151.7226S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_ENCCU5.547e-1136.9626S protease regulatory subunit 6B homolog OS=Ence... [more]

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Properties
Property NameValue
Genbank descriptionC32011E08EF RVDevelop1 Citrus clementina cDNA clone C32011E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bp
GGCACTTTTATTTCTCCGCAAGCCATCTTAAATCTTCAGTCTTCCAAGCT
AGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCAAGG
ACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTCAAA
ACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAAAGA
AATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGGAGT
CTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGATAAG
CAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAAGAT
AATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGCAGA
TTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGATATA
GAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCAAAT
TCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAG
AGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAGATT
GAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAAATT
TGTAAAGCTTGGAATTGATCCTCCAAGGGTGTTCTATGCTATGGTCCTCT
GGCACTGGTAAACATTTATAGCAGAGCTGTAGCTACAGAACCGATGCT
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