FC920672

Overview
NameFC920672
Unique NameFC920672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:4..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.727e-16
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  349 IISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +I    ED   V N     +FVV +   +    +  G RV +D+    +   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE F ++GIDPP+
Sbjct:   67 VIEVLDEDRAIVQNYNG-PRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPK 175          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.727e-16
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L SD Q M++  PL V    +I+    +D + ++      KFV  +   V   ++E G  V +++    +   LP + D  V  M V+E PDV+Y+D+GG  EQI ++REVVE P+  PE F K+G++PP+
Sbjct:   89 LRSDLQRMKKP-PLIVGTVEEIL----DDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPK 214          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.727e-16
Identity = 41/119 (34.45%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PL + +  ++I  N+     ++     + + V +   ++   ++    VG+DR+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E + ++GIDPPR
Sbjct:   81 PLVIGQFMEMIDQNNA----IVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 195          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.480e-16
Identity = 65/217 (29.95%), Postives = 107/217 (49.31%), Query Frame = 1
Query:   40 SSKLAKESKAMAPE--PEDEIKDEKNPRP--LDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            S++L KE KA   E   E EI D  N +   L E+   L +   +    + I K E E K++ ++   L  +KE++          ++  +       PL V      +     + K V+       F+V +   V+P D+  G RV +++    +   LP   D     M V+E+P+V Y D+GG ++Q++++REVVELP+ HPE F K+GI+PP+
Sbjct:    8 STELKKEKKAFTEEFKEEKEINDNSNLKNDLLKEE---LQEKARIAELESRILKLELEKKELERENLQL--MKENE----------ILRRELDRMRVPPLIVGTVVDKVG----ERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPK 205          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.480e-16
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   53 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPK 179          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  367 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +D + ++      +FVV +   +    ++ G RV +D+    I   LP + DPSV    V E+P VTYND+GG ++Q++++RE +ELP+ HPE F ++GI+PP+
Sbjct:   70 DDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPK 173          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184          
The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PSMR_PYRHO5.727e-1639.09Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_METKA5.727e-1635.88Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PRS6B_SOLTU5.727e-1634.4526S protease regulatory subunit 6B homolog OS=Sola... [more]
PSMR_METJA7.480e-1629.95Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS8_XENLA7.480e-1633.5926S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PSMR_PYRKO9.769e-1637.50Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS8_RAT9.769e-1633.5926S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG9.769e-1633.5926S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE9.769e-1633.5926S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN9.769e-1633.5926S protease regulatory subunit 8 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC32011E08EF RVDevelop1 Citrus clementina cDNA clone C32011E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bp
GGCACTTTTATTTCTCCGCAAGCCATCTTAAATCTTCAGTCTTCCAAGCT
AGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCAAGG
ACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTCAAA
ACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAAAGA
AATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGGAGT
CTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGATAAG
CAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAAGAT
AATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGCAGA
TTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGATATA
GAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCAAAT
TCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAG
AGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAGATT
GAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAAATT
TGTAAAGCTTGGAATTGATCCTCCAAGGGTGTTCTATGCTATGGTCCTCT
GGCACTGGTAAACATTTATAGCAGAGCTGTAGCTACAGAACCGATGCT
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