FC920672

Overview
NameFC920672
Unique NameFC920672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:4..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 37/103 (35.92%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            + KY++      +++VG+ + V  + +++G+RV +D     I   LP + DP V  MT  E+ ++T++ +GG  EQI ++REV+ELP+ +PE F ++GI PP+
Sbjct:  114 EEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPK 216          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 61/210 (29.05%), Postives = 99/210 (47.14%), Query Frame = 1
Query:  124 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +ED +A + T  +   +  ++   + +K+ A++ N  C      IKE+              +K  + ++ P  V    +I+  N ED                 K V+      + I   VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PP+
Sbjct:   13 EEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPK 206          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 50/166 (30.12%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  193 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PP+
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPK 168          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 50/166 (30.12%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  193 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PP+
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPK 168          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 50/166 (30.12%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  193 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PP+
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPK 168          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.411e-14
Identity = 50/166 (30.12%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  193 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PP+
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPK 168          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.842e-14
Identity = 61/210 (29.05%), Postives = 98/210 (46.67%), Query Frame = 1
Query:  124 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +ED +A + T  +   +  +    + +K+ A++ N  C      IKE+              +K  + ++ P  V    +I+  N ED                 K V+      + I   VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PP+
Sbjct:   13 EEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPK 206          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PP+
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPK 169          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PP+
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPK 169          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PP+
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPK 169          
The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PRS10_YEAST8.270e-1535.9226S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PRS6A_BRACM1.411e-1429.0526S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS10_SPETR1.411e-1430.1226S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE1.411e-1430.1226S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN1.411e-1430.1226S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN1.411e-1430.1226S protease regulatory subunit S10B OS=Bos taurus... [more]
PS6AA_ARATH1.842e-1429.0526S protease regulatory subunit 6A homolog A OS=Ar... [more]
PSMR_SULIY3.143e-1436.89Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN3.143e-1436.89Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM3.143e-1436.89Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionC32011E08EF RVDevelop1 Citrus clementina cDNA clone C32011E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bp
GGCACTTTTATTTCTCCGCAAGCCATCTTAAATCTTCAGTCTTCCAAGCT
AGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCAAGG
ACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTCAAA
ACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAAAGA
AATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGGAGT
CTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGATAAG
CAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAAGAT
AATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGCAGA
TTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGATATA
GAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCAAAT
TCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAG
AGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAGATT
GAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAAATT
TGTAAAGCTTGGAATTGATCCTCCAAGGGTGTTCTATGCTATGGTCCTCT
GGCACTGGTAAACATTTATAGCAGAGCTGTAGCTACAGAACCGATGCT
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