FC920672

Overview
NameFC920672
Unique NameFC920672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:4..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PP+
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPK 169          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PP+
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPK 169          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE F ++G++PP+
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPK 169          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  412 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLGI PP+
Sbjct:  120 VVGL---VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPK 205          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.361e-14
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + E+P+VTY+++GG +EQI ++REVVELP+ +PE F ++G++PP+
Sbjct:   67 DGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPK 169          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.361e-14
Identity = 58/208 (27.88%), Postives = 97/208 (46.63%), Query Frame = 1
Query:  124 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQ---MMQEEQPLQVARCTKIISPNSED------AKYVINVKQIAKFVV--------------GLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D+D +A + T  +   +  +    + +KD  ++ N           L   S  + + + Q    + ++ P  V    +I+  N ED      A   ++ ++  K VV              GL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H ++F KLGI PP+
Sbjct:   18 DDDQLASMSTEDIVRATRLLDNETRVLKDELQRTN-----------LEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGL---VDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPK 211          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            VVGL   V P +++ G  VGV+++ Y I   LP + D  V  M V+EKP   Y+D+GG ++QI+++ E + LPM H E+F KLG+ PP+
Sbjct:  120 VVGL---VDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPK 205          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.144e-14
Identity = 37/119 (31.09%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PL + +  +++  N+     ++     + + V +   ++   ++    V + R+   +   LPP+ D S+++++  EKPDV+YND+GGC  Q +++RE VELP+ H E + ++GIDPPR
Sbjct:   76 PLVIGQFMEMVDQNNG----IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 190          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PL V   T II    +  + V+      +F+V +   V+PT ++ G+R  +++    I   LP   D  V  M + + P  TY D+GG ++QI ++RE VELPM  P+ F K+GI+PP+
Sbjct:   74 PLIVGTITDII----DSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPK 188          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  367 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +++Y+ VGG  +QI ++RE +ELP+++PE F+++GI PP+
Sbjct:   71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPK 174          
The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PSMR_SULIL3.143e-1436.89Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK3.143e-1436.89Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA3.143e-1436.89Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PS6AB_ARATH3.143e-1446.0726S protease regulatory subunit 6A homolog B OS=Ar... [more]
PSMR_SULSO5.361e-1435.92Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PRS6A_ORYSJ5.361e-1427.8826S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_SOLLC7.001e-1443.8226S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6B_ARATH9.144e-1431.0926S protease regulatory subunit 6B homolog OS=Arab... [more]
PSMR_METHJ1.560e-1335.29Proteasome-activating nucleotidase OS=Methanospiri... [more]
PS10B_ARATH2.660e-1333.6526S protease regulatory subunit S10B homolog B OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32011E08EF RVDevelop1 Citrus clementina cDNA clone C32011E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bp
GGCACTTTTATTTCTCCGCAAGCCATCTTAAATCTTCAGTCTTCCAAGCT
AGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCAAGG
ACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTCAAA
ACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAAAGA
AATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGGAGT
CTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGATAAG
CAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAAGAT
AATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGCAGA
TTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGATATA
GAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCAAAT
TCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAG
AGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAGATT
GAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAAATT
TGTAAAGCTTGGAATTGATCCTCCAAGGGTGTTCTATGCTATGGTCCTCT
GGCACTGGTAAACATTTATAGCAGAGCTGTAGCTACAGAACCGATGCT
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