FC920672

Overview
NameFC920672
Unique NameFC920672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:4..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            P+ V    ++I  N      +++     ++ VG+   V    +E G  + +      +   L  ++DP V++M VE+ P  +Y D+GG + QI++++E VELP+ HPE +  +GI PP+
Sbjct:  109 PMSVGNLEELIDENHA----IVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            P+ V    ++I  N      +++     ++ VG+   V    +E G  + +      +   L  ++DP V++M VE+ P  +Y D+GG + QI++++E VELP+ HPE +  +GI PP+
Sbjct:  109 PMSVGNLEELIDENHA----IVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  556 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PDVTY D+GG KE+++K+RE++ELPM HPE F KLGI+PP+
Sbjct:  174 PDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPK 214          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 36/119 (30.25%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PL + +  + I  N+     ++     + +VV +   +    ++    V + R+   +   LPP+ D S++M+  +E+PDV+Y DVGG   Q +++RE VELP+   + + ++GIDPPR
Sbjct:   55 PLVIGQFLEAIDQNTA----IVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPR 169          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 39/145 (26.90%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  250 SDTGLAAPSQWDLVSDKQMMQEEQ--PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            S++ +  P +     +K+ ++E +  PL +    +II    +D   ++    +  + V +   V    +E G  V +      I   L    DP V++M +++ P  +Y+D+GG + QI++++E VELP+ HPE + ++GI PP+
Sbjct:   77 SNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEII----DDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPK 217          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            P+ V    +II  N      +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M VE+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PP+
Sbjct:  106 PMSVGTLEEIIDDNHA----IVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPK 220          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            P+ V    +II  N      +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M VE+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PP+
Sbjct:  106 PMSVGTLEEIIDDNHA----IVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPK 220          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            P+ V    +II  N      +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M VE+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PP+
Sbjct:  106 PMSVGTLEEIIDDNHA----IVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPK 220          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 35/131 (26.72%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  292 SDKQMMQEEQ--PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +D+++++E +  PL V    +II  N       +  +   + +      V  + +  G  V ++     +   +  ++DP V +M VE+ P  +Y+D+GG + Q+++M+E +ELP+ HPE + ++GI PP+
Sbjct:   93 ADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIM----SFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPK 219          
The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PRS4B_ARATH7.245e-1129.4126S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH7.245e-1129.4126S proteasome regulatory subunit 4 homolog A OS=A... [more]
Y1156_METJA9.462e-1165.85Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
PRS6B_SCHPO9.462e-1130.2526S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS4_YEAST9.462e-1126.9026S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_RAT9.462e-1131.9326S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE9.462e-1131.9326S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN9.462e-1131.9326S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_DICDI9.462e-1126.7226S protease regulatory subunit 4 homolog OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionC32011E08EF RVDevelop1 Citrus clementina cDNA clone C32011E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bp
GGCACTTTTATTTCTCCGCAAGCCATCTTAAATCTTCAGTCTTCCAAGCT
AGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCAAGG
ACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTCAAA
ACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAAAGA
AATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGGAGT
CTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGATAAG
CAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAAGAT
AATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGCAGA
TTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGATATA
GAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCAAAT
TCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAG
AGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAGATT
GAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAAATT
TGTAAAGCTTGGAATTGATCCTCCAAGGGTGTTCTATGCTATGGTCCTCT
GGCACTGGTAAACATTTATAGCAGAGCTGTAGCTACAGAACCGATGCT
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