FC920672

Overview
NameFC920672
Unique NameFC920672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:4..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  367 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +++Y+ VGG  +QI ++RE +ELP+++PE F+++GI PP+
Sbjct:   71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPK 174          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PL +     ++  N    + ++      +F+V     V+P DI+ G R  +++    I   LP   D  V  M + + P   Y D+GG KEQI ++RE VELP+  PE F ++GI+PP+
Sbjct:   99 PLIIGTVVDVVDAN----RVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPK 213          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            + K +I      KFVV     ++  ++  G +V +++    +   LP   DPSV  M V + P++ Y  +GG + QI +++E VELP+L PE F K+GI+PP+
Sbjct:   92 NGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPK 194          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  292 SDKQMMQEEQPLQVARCTKIISP----NSEDAKYVINVKQIAKFVVGLG-------DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +DK  +  + P  VA   +II       ++ +K V+ VK   +  + L        DK+ P D+     VG++++ Y I   LPP+ D  V  M ++EKP   Y+D+GG  +QI+++ E V LPM H E+F  +GI PP+
Sbjct:   70 NDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVV-VKASTRQTIFLAYPGIVDVDKLRPGDL-----VGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPK 203          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            D K ++        +V +   +    ++ G  V + +    I   LP + D  V    V EKP+V Y+D+GG  EQI ++REV+ELP+ +PE F ++GIDPP+
Sbjct:   67 DGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPK 169          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L  +K  +Q+E        TK++SP           +D + V+        +V +   V    ++ G  V ++     I   LP + DP V  M VEE+P V + DVGG +EQI ++ E V LP+ +P  F +LGIDPP+
Sbjct:   35 LTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPK 174          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  433 VSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            V P ++  G  +GV+++ Y I   LP + D  V  M V+EKP   Y+D+GG  +QIE++ E + LPM   +KF KLG+ PP+
Sbjct:  139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPK 220          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PL +   T +I  N    + ++      +F+VG+   ++  +I+ G R  +++    I   LP   D  +  M V E P   Y ++GG ++QI ++RE VELP+  PE F K+GI+PP+
Sbjct:   74 PLVIGTVTDLIDEN----RVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPK 188          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PP+
Sbjct:  136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 221          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PP+
Sbjct:  136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 221          
The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PS10A_ARATH2.660e-1333.6526S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR_METB63.475e-1332.77Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_UNCMA4.538e-1334.95Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS6A_DICDI5.927e-1333.5726S protease regulatory subunit 6A homolog OS=Dict... [more]
PSMR_SULTO1.724e-1234.95Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_AERPE1.724e-1232.14Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS6A_SCHPO2.252e-1241.4626S protease regulatory subunit 6A OS=Schizosaccha... [more]
PSMR_METPE2.941e-1231.93Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS6A_RAT2.941e-1242.8626S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN2.941e-1242.8626S protease regulatory subunit 6A OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC32011E08EF RVDevelop1 Citrus clementina cDNA clone C32011E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bp
GGCACTTTTATTTCTCCGCAAGCCATCTTAAATCTTCAGTCTTCCAAGCT
AGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCAAGG
ACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTCAAA
ACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAAAGA
AATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGGAGT
CTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGATAAG
CAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAAGAT
AATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGCAGA
TTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGATATA
GAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCAAAT
TCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAG
AGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAGATT
GAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAAATT
TGTAAAGCTTGGAATTGATCCTCCAAGGGTGTTCTATGCTATGGTCCTCT
GGCACTGGTAAACATTTATAGCAGAGCTGTAGCTACAGAACCGATGCT
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