FC920672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11 Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 P+ V ++I N +++ ++ VG+ V +E G + + + L ++DP V++M VE+ P +Y D+GG + QI++++E VELP+ HPE + +GI PP+ Sbjct: 109 PMSVGNLEELIDENHA----IVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11 Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 P+ V ++I N +++ ++ VG+ V +E G + + + L ++DP V++M VE+ P +Y D+GG + QI++++E VELP+ HPE + +GI PP+ Sbjct: 109 PMSVGNLEELIDENHA----IVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 1 Query: 556 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 PDVTY D+GG KE+++K+RE++ELPM HPE F KLGI+PP+ Sbjct: 174 PDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPK 214
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 36/119 (30.25%), Postives = 66/119 (55.46%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 PL + + + I N+ ++ + +VV + + ++ V + R+ + LPP+ D S++M+ +E+PDV+Y DVGG Q +++RE VELP+ + + ++GIDPPR Sbjct: 55 PLVIGQFLEAIDQNTA----IVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPR 169
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 39/145 (26.90%), Postives = 76/145 (52.41%), Query Frame = 1 Query: 250 SDTGLAAPSQWDLVSDKQMMQEEQ--PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 S++ + P + +K+ ++E + PL + +II +D ++ + + V + V +E G V + I L DP V++M +++ P +Y+D+GG + QI++++E VELP+ HPE + ++GI PP+ Sbjct: 77 SNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEII----DDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPK 217
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 P+ V +II N +++ ++ V + V +E G V ++ + + L DP VT+M VE+ P TY D+GG QI++++E VELP+ HPE + ++GI PP+ Sbjct: 106 PMSVGTLEEIIDDNHA----IVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPK 220
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 P+ V +II N +++ ++ V + V +E G V ++ + + L DP VT+M VE+ P TY D+GG QI++++E VELP+ HPE + ++GI PP+ Sbjct: 106 PMSVGTLEEIIDDNHA----IVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPK 220
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 P+ V +II N +++ ++ V + V +E G V ++ + + L DP VT+M VE+ P TY D+GG QI++++E VELP+ HPE + ++GI PP+ Sbjct: 106 PMSVGTLEEIIDDNHA----IVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPK 220
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11 Identity = 35/131 (26.72%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 292 SDKQMMQEEQ--PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 +D+++++E + PL V +II N + + + + V + + G V ++ + + ++DP V +M VE+ P +Y+D+GG + Q+++M+E +ELP+ HPE + ++GI PP+ Sbjct: 93 ADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIM----SFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPK 219 The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bpback to top |