FC920672

Overview
NameFC920672
Unique NameFC920672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:4..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.037e-17
Identity = 56/170 (32.94%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  169 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            Y+  I+ AE  I    +K  +L  ++    GL A  +  L+ ++  + +E    V    K +  N    K ++ V    K+VV +   +   +I+  +RV +  + YQ+   LP K+DP V++M VE+ PD TY  VGG ++QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   20 YTQKIQDAELAI---LQKTQNLRRLEAQRNGLNARVR--LLREEIQLLQEPGSYVGEVIKTMGKN----KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPK 180          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.180e-17
Identity = 49/158 (31.01%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  205 KDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            + + +K N+L  ++     L   S+  ++ ++  + +E    V    K++  N    K ++ V    K+VV +   +  T I    RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   45 RQLRQKTNNLNRLEAQRNELN--SRVRMLREELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPK 196          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.180e-17
Identity = 52/167 (31.14%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  178 SIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            S ++   E +D+ +K+ DL   +   T     S+ D+ S + + Q      V    K +S    + K+++      ++VVG    ++  ++++G RV +D     I   LP ++DP V  M+ E+  +++Y+DVGG  EQI ++REVVELP+++PE F ++GI PP+
Sbjct:   28 SYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQI-----VGEVLKQLS----EEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPK 185          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.766e-17
Identity = 62/186 (33.33%), Postives = 97/186 (52.15%), Query Frame = 1
Query:  121 LDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L + ++   K  G  PY   I K E+    +A+K  +L  ++     L A  +  L  + Q++QE    Q +   +++ P  +  K ++ V    KFVV L   V   D+    RV +    Y +   LP K+DP V++M VE+ PD TY  VGG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:    3 LTKMEVDSTKGEGFRPYY--ITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRM-LREELQLLQE----QGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 180          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.836e-17
Identity = 45/140 (32.14%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L +DK+ ++ E     +  +++  P +         +D + ++      +FVV +   +  + +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE F ++GIDPP+
Sbjct:   33 LEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPK 172          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 8.836e-17
Identity = 54/175 (30.86%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  157 GLGPY-STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            G+ PY    I++ E +I+   + V  L   +      A   +   + D+  + +E    V    KI+S    D K ++ V+   K++V +   ++  D++   RV +  + Y +   L  K DP V++M VE+ PD TY+ VGG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRN-----ALNDKVRFIKDELRLLQEPGSYVGEVIKIVS----DKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK 183          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.154e-16
Identity = 59/174 (33.91%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  157 GLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            G G  S  I+K E+    +A+K  +L  ++     L A  +  L  + Q++QE    Q +   +++ P  +  K ++ V    KFVV L   +   D+    RV +    Y +   LP K+DP V++M VE+ PD TY  VGG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   16 GEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRM-LREELQLLQE----QGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 183          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.154e-16
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  283 DLVSDKQMMQEEQPL------QVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +L S  +M++EE  L       V    K++  N    K ++ V    K+VV +   +  T +    RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   63 ELNSRVRMLREELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPK 196          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.968e-16
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  199 EIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPL------QVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            +I+++  KVN+    K  D       + +L +  +M++EE  L       VA   K++  N    K ++ V    KFVV +   V    +    R  +    Y +   LP KIDP V++M VE+ PD TY+ VGG  +QI++++EV+ELP+ HPE F  LGI  P+
Sbjct:   23 KIEELEIKVNE----KAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKN----KVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPK 180          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.571e-16
Identity = 45/140 (32.14%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  286 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            L +DK+ ++ E     +  +++  P +         +D + ++      +FVV +   +    +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE F ++GIDPP+
Sbjct:   36 LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPK 175          
The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PRS8_SCHPO3.037e-1732.9426S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8A_ARATH5.180e-1731.0126S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS10_CAEEL5.180e-1731.14Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS8_MANSE6.766e-1733.3326S protease regulatory subunit 8 OS=Manduca sexta... [more]
PSMR_PYRFU8.836e-1732.14Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS8_YEAST8.836e-1730.8626S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_DROME1.154e-1633.9126S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS8B_ARATH1.154e-1634.7826S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8_DICDI1.968e-1633.7326S protease regulatory subunit 8 OS=Dictyostelium... [more]
PSMR_PYRAB2.571e-1632.14Proteasome-activating nucleotidase OS=Pyrococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC32011E08EF RVDevelop1 Citrus clementina cDNA clone C32011E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bp
GGCACTTTTATTTCTCCGCAAGCCATCTTAAATCTTCAGTCTTCCAAGCT
AGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCAAGG
ACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTCAAA
ACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAAAGA
AATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGGAGT
CTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGATAAG
CAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAAGAT
AATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGCAGA
TTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGATATA
GAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCAAAT
TCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAG
AGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAGATT
GAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAAATT
TGTAAAGCTTGGAATTGATCCTCCAAGGGTGTTCTATGCTATGGTCCTCT
GGCACTGGTAAACATTTATAGCAGAGCTGTAGCTACAGAACCGATGCT
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