FC920672

Overview
NameFC920672
Unique NameFC920672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:4..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PP+
Sbjct:  101 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 186          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PP+
Sbjct:  120 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 205          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 36/119 (30.25%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            PL +   T +I    ++++ ++      +F+V     + P  ++ G+R  +++    I   LP   D  +  M + E P+ TY ++GG + QIE++RE VELP+  P+ F K+GI PP+
Sbjct:   74 PLVIGTVTDVI----DNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPK 188          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            V+GL D  K+ P D+     VGV+++ Y I   LP   D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PP+
Sbjct:  139 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 224          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  448 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            ++ G  V + +    +   LPP+ D S+ M+  +EKPD++Y D+GG   Q +++RE VELP+ H E + ++GIDPPR
Sbjct:  120 LKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPR 196          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12
Identity = 41/179 (22.91%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  160 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEE------QPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            LG  + S++   ++++     + + C   ES+       +     + + +Q E       PL +     +I    ++ + ++      +F+V +   +    +  G +V ++++   I   +P   +P V  M V E  +V Y+ +GG  EQI++++E VELP++ PE+F ++GI+PP+
Sbjct:   20 LGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVI----KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPK 194          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.118e-11
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  505 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            LPP+ D S++M+  +EKPDV Y+D+GG   Q +++RE VELP+ H E + ++GI+PPR
Sbjct:  140 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 197          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 41/179 (22.91%), Postives = 87/179 (48.60%), Query Frame = 1
Query:  160 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEE------QPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            LG  + S++   ++++     + + C   ES+       +     + + +Q E       PL +     +I    ++ + ++      +F+V +   +    +  G +V ++++   I   +P   +P V  M V E  +V Y+ +GG  EQI++++E VELP+  PE+F ++GI+PP+
Sbjct:   20 LGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVI----KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPK 194          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  448 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            ++  M V + R+   +   LPP  D S+++M   EKPDVTY DVGG   Q +++RE VELP++  + + ++GIDPPR
Sbjct:  131 LKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR 207          
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678
            P+ V    +II    +D   +++    ++  V +   V    +E G  V ++   + +   L    DP V++M +E+ P  TY DVGG  +QI++++E VELP+ HPE + ++GI PP+
Sbjct:  109 PMAVGSLEEII----DDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPK 223          
The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PR6AB_XENLA2.941e-1242.8626S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PR6AA_XENLA2.941e-1242.8626S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PSMR_METMJ5.017e-1230.25Proteasome-activating nucleotidase OS=Methanoculle... [more]
PRS6A_MOUSE5.017e-1242.8626S protease regulatory subunit 6A OS=Mus musculus... [more]
PRS6B_CAEEL6.553e-1240.26Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PSMR_METAC8.558e-1222.91Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6B_MANSE1.118e-1150.0026S protease regulatory subunit 6B OS=Manduca sext... [more]
PSMR_METMA1.907e-1122.91Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6B_YEAST1.907e-1142.8626S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS4_CAEEL1.907e-1131.09Probable 26S protease regulatory subunit 4 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC32011E08EF RVDevelop1 Citrus clementina cDNA clone C32011E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bp
GGCACTTTTATTTCTCCGCAAGCCATCTTAAATCTTCAGTCTTCCAAGCT
AGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCAAGG
ACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTCAAA
ACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAAAGA
AATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGGAGT
CTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGATAAG
CAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAAGAT
AATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGCAGA
TTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGATATA
GAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCAAAT
TCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAG
AGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAGATT
GAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAAATT
TGTAAAGCTTGGAATTGATCCTCCAAGGGTGTTCTATGCTATGGTCCTCT
GGCACTGGTAAACATTTATAGCAGAGCTGTAGCTACAGAACCGATGCT
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