FC920949

Overview
NameFC920949
Unique NameFC920949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length242
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14221 contig Ccv1_Contig14221:234..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_DICDI (40S ribosomal protein S17 OS=Dictyostelium discoideum GN=rps17 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.115e-14
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEA-LGMNEIPGLVRVD 214
            AGF THLM RI NGPVRGIS KLQE ERE+R ++VP ESAIKT+++++D+   +ML++ L    IP +  VD
Sbjct:   51 AGFCTHLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIPQIHVVD 122          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_NEUCR (40S ribosomal protein S17 OS=Neurospora crassa GN=rps-17 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.456e-14
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAI------KTDQIEVDKATLDMLEALGMNEIP----GLVRVDPVAPGVEFG 241
            AG++THLM RIQ GPVRGIS KLQE ERER+  +VP+ SA+      ++ Q++VD  T D+L+ LG + IP     + +  PV  G  FG
Sbjct:   51 AGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSALDFTQNSESGQLDVDTETKDLLKHLGFDSIPVNVIPVTQAQPVERGRRFG 140          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_ANOGA (40S ribosomal protein S17 OS=Anopheles gambiae GN=RpS17 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.456e-14
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPG 229
            AGF THLM R+++  VRGIS+KLQE ERERR ++VPD SA++ D IEVD  T +ML+ L  N I  +   +P APG
Sbjct:   51 AGFVTHLMKRLRHSQVRGISIKLQEEERERRDNYVPDVSALEQDIIEVDPETKEMLKHLDFNNIV-VQLTNPTAPG 125          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_RAT (40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_ICTPU (40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_FELCA (40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG+ THLM RIQ GPVRGIS+KLQE ERERR ++VP+ SA+  + IEVD  T +ML+ L    +  L    P   G+ F
Sbjct:   51 AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV-GMNF 128          
The following BLAST results are available for this feature:
BLAST of FC920949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RS17_DICDI1.115e-1456.9440S ribosomal protein S17 OS=Dictyostelium discoid... [more]
RS17_NEUCR1.456e-1447.7840S ribosomal protein S17 OS=Neurospora crassa GN=... [more]
RS17_ANOGA1.456e-1455.2640S ribosomal protein S17 OS=Anopheles gambiae GN=... [more]
RS17_RAT4.238e-1451.9040S ribosomal protein S17 OS=Rattus norvegicus GN=... [more]
RS17_PIG4.238e-1451.9040S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]
RS17_MOUSE4.238e-1451.9040S ribosomal protein S17 OS=Mus musculus GN=Rps17... [more]
RS17_ICTPU4.238e-1451.9040S ribosomal protein S17 OS=Ictalurus punctatus G... [more]
RS17_HUMAN4.238e-1451.9040S ribosomal protein S17 OS=Homo sapiens GN=RPS17... [more]
RS17_FELCA4.238e-1451.9040S ribosomal protein S17 OS=Felis catus GN=RPS17 ... [more]
RS17_CRIGR4.238e-1451.9040S ribosomal protein S17 OS=Cricetulus griseus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32201B12EF RVDevelopN Citrus clementina cDNA clone C32201B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920949 ID=FC920949; Name=FC920949; organism=Citrus clementina; type=EST; length=242bp
CGCCGGGTTCTCGACCCACTTGATGAACCGGATCCAGAATGGTCCGGTTC
GTGGCATCTCGTTGAAGCTCCAAGAGGTGGAGCGCGAGCGCCGCATGGAC
TTTGTCCCGGACGAGAGTGCCATCAAGACTGATCAAATTGAGGTCGATAA
GGCGACTCTTGACATGCTTGAGGCTCTTGGTATGAATGAGATCCCGGGTC
TTGTTCGGGTCGACCCGGTTGCTCCAGGAGTTGAGTTCGGGC
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